CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ISCW004820
(
Ixodes scapularis
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
ISCW004820
T60692_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ISCW004820-PA
S1
76
159
RPFKGEVLDAVVTQVNKVSGVGAPDTDSVCISFQSIPSDMQFDPNSNPPCYRTQDEDVIIQQDDEIRLKIVGTRVDASDIVSCS
Links
Other
S1
family RBPs
Other
Ixodes scapularis
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PASA_GEN_8000031
Daphnia pulex
PASA_GEN_8000031
N
0.714
POLR2G
Anolis carolinensis
ENSACAG00000001005
N
0.702
polr2gl
Danio rerio
ENSDARG00000056127
N
0.702
polr2g
Xenopus tropicalis
ENSXETG00000006022
N
0.702
AAI28969
Xenopus laevis
AAI28969
N
0.702
XP_780458.1
Strongylocentrotus purpuratus
XP_780458.1
N
0.702
XP_001175504.1
Strongylocentrotus purpuratus
XP_001175504.1
N
0.702
XP_001175728.1
Strongylocentrotus purpuratus
XP_001175728.1
N
0.702
XP_001176876.1
Strongylocentrotus purpuratus
XP_001176876.1
N
0.702