PASA_GEN_8000031 (Daphnia pulex)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 PASA_GEN_8000031 T61351_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PASA_GEN_8000031 S1 78 161

Links

Other S1 family RBPs
Other Daphnia pulex RBPs

76 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_Genewise1Plus.C_sca_120103 Lottia gigantea estExt_Genewise1Plus.C_sca_120103 N 0.881
estExt_fgenesh2_pg.C_1620033 Branchiostoma floridae estExt_fgenesh2_pg.C_1620033 N 0.869
polr2gl Danio rerio ENSDARG00000056127 N 0.869
ENSCING00000004991 Ciona intestinalis ENSCING00000004991 N 0.869
POLR2G Anolis carolinensis ENSACAG00000001005 N 0.869
AAI28969 Xenopus laevis AAI28969 N 0.869
polr2g Xenopus tropicalis ENSXETG00000006022 N 0.869
XP_001175504.1 Strongylocentrotus purpuratus XP_001175504.1 N 0.869
XP_780458.1 Strongylocentrotus purpuratus XP_780458.1 N 0.869
XP_001175728.1 Strongylocentrotus purpuratus XP_001175728.1 N 0.869
estExt_gwp.C_3050025 Branchiostoma floridae estExt_gwp.C_3050025 N 0.869
XP_002157143.1 Hydra magnipapillata XP_002157143.1 N 0.869
XP_001176876.1 Strongylocentrotus purpuratus XP_001176876.1 N 0.869
POLR2G Macaca mulatta ENSMMUG00000014368 N 0.857
POLR2G Monodelphis domestica ENSMODG00000007984 N 0.857
Ame_R013924 Ailuropoda melanoleuca Ame_R013924 N 0.857
POLR2G Macropus eugenii ENSMEUG00000011547 N 0.857
Polr2g Mus musculus ENSMUSG00000071662 N 0.857
POLR2G Gorilla gorilla ENSGGOG00000011739 N 0.857
POLR2G Loxodonta africana ENSLAFG00000004354 N 0.857
ENSMLUG00000003971 Myotis lucifugus ENSMLUG00000003971 N 0.857
ENSPPYG00000003147 Pongo pygmaeus ENSPPYG00000003147 N 0.857
Polr2g Rattus norvegicus ENSRNOG00000019439 N 0.857
POLR2G Takifugu rubripes ENSTRUG00000002492 N 0.857
POLR2G Tursiops truncatus ENSTTRG00000002478 N 0.857
POLR2G Pan troglodytes ENSPTRG00000003786 N 0.857
POLR2G Gasterosteus aculeatus ENSGACG00000017706 N 0.857
POLR2G Oryctolagus cuniculus ENSOCUG00000009485 N 0.857
POLR2G Oryzias latipes ENSORLG00000003154 N 0.857
POLR2G Procavia capensis ENSPCAG00000016408 N 0.857
POLR2G Ornithorhynchus anatinus ENSOANG00000005808 N 0.857
ENSMLUG00000011039 Myotis lucifugus ENSMLUG00000011039 N 0.857
POLR2G Homo sapiens ENSG00000168002 N 0.857
POLR2G Canis familiaris ENSCAFG00000015461 N 0.857
RPB7_BOVIN Bos taurus ENSBTAG00000009483 N 0.857
POLR2G Cavia porcellus ENSCPOG00000001153 N 0.857
LOC100398629 Callithrix jacchus ENSCJAG00000018688 N 0.857
Polr2g Dipodomys ordii ENSDORG00000015696 N 0.857
LOC100063883 Equus caballus ENSECAG00000021465 N 0.857
POLR2G Pteropus vampyrus ENSPVAG00000003481 N 0.845
estExt_fgenesh1_pg.C_1060040 Nematostella vectensis estExt_fgenesh1_pg.C_1060040 N 0.833
estExt_Genewise1Plus.C_2200037 Capitella teleta estExt_Genewise1Plus.C_2200037 N 0.833
POLR2G Microcebus murinus ENSMICG00000009967 N 0.833
POLR2G Vicugna pacos ENSVPAG00000009534 N 0.821
ENSCSAVG00000002667 Ciona savignyi ENSCSAVG00000002667 N 0.821
PHUM079870 Pediculus humanus PHUM079870 N 0.798
amel4_ncbi_hmm13760 Apis mellifera amel4_ncbi_hmm13760 N 0.786
amel4_ncbi_hmm13760 Tribolium castaneum amel4_ncbi_hmm13760 N 0.786
nasonia_NCBI_hmm304924 Nasonia vitripennis nasonia_NCBI_hmm304924 N 0.786
LOAG_03448 Loa loa LOAG_03448 N 0.786
CpipJ_CPIJ001219 Culex pipiens CpipJ_CPIJ001219 N 0.774
AAEL003401 Aedes aegypti AAEL003401 N 0.774
Minc17095 Meloidogyne incognita Minc17095 N 0.774
CPIJ001219 Culex quinquefasciatus CPIJ001219 N 0.774
rpb-7 Caenorhabditis elegans Y54E10BR.6 N 0.762
CJA18930 Caenorhabditis japonica CJA18930 N 0.762
CBG04195 Caenorhabditis briggsae CBG04195 N 0.762
GK11212 Drosophila willistoni FBgn0213223 N 0.750
GE26402 Drosophila yakuba FBgn0243428 N 0.750
GA27654-RA Drosophila pseudoobscura FBgn0249019 N 0.750
GJ23373 Drosophila virilis FBgn0210474 N 0.750
Rpb7 Drosophila melanogaster FBgn0051155 N 0.750
GF11824 Drosophila ananassae FBgn0088864 N 0.750
GA16051-RA Drosophila pseudoobscura FBgn0076067 N 0.750
CBN18093 Caenorhabditis brenneri CBN18093 N 0.750
CRE30052 Caenorhabditis remanei CRE30052 N 0.750
GD20374 Drosophila simulans FBgn0191847 N 0.750
GG20814 Drosophila erecta FBgn0113000 N 0.750
GI22645 Drosophila mojavensis FBgn0145373 N 0.750
GL12210 Drosophila persimilis FBgn0149817 N 0.750
GH18755 Drosophila grimshawi FBgn0126222 N 0.750
GM25797 Drosophila sechellia FBgn0180653 N 0.750
Bm1_48540 Brugia malayi Bm1_48540 N 0.738
SNAPOd2T00009931001 Oikopleura dioica SNAPOd2T00009931001 N 0.726
ISCW004820 Ixodes scapularis ISCW004820 N 0.714
Aqu1.223919 Amphimedon queenslandica Aqu1.223919 N 0.702