CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gww2.6.559.1
(
Phanerochaete chrysosporium
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
e_gww2.6.559.1
T61064_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gww2.6.559.1
S1
78
154
KPFKGEVVDGVVNNMGFFADVGPLTVFVSHQLIHPDMKFDPNSNPPSFASDEQIIEKNTKVRLKIVGTRVDATEIFA
Links
Other
S1
family RBPs
Other
Phanerochaete chrysosporium
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh2_pg.4_#_679
Schizophyllum commune
fgenesh2_pg.4_#_679
N
0.961
estExt_Genewise1Plus.C_60119
Heterobasidion annosum
estExt_Genewise1Plus.C_60119
N
0.938
genemark.4513_g
Pleurotus ostreatus
genemark.4513_g
N
0.925
estExt_fgenesh2_pg.C_250108
Laccaria bicolor
estExt_fgenesh2_pg.C_250108
N
0.925
CC1G_04529
Coprinopsis cinerea
CC1G_04529
N
0.912
fgenesh3_pm.29__13
Postia placenta
fgenesh3_pm.29__13
N
0.912
estExt_Genewise1Plus.C_1900018
Postia placenta
estExt_Genewise1Plus.C_1900018
N
0.912
estExt_fgenesh2_kg.C_101139
Serpula lacrymans
estExt_fgenesh2_kg.C_101139
N
0.900
estExt_fgenesh2_kg.C_60140
Agaricus bisporus
estExt_fgenesh2_kg.C_60140
N
0.863