CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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YTHDC2
(
Tetraodon nigroviridis
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
ENSTNIG00000003707
T62149_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000006306
YTH
1235
1324
LIFSVQGSGHFQGYARMTSVISQESCQDWDVLGLGGVFSVEWLQKESIPFHCTQHILNPWNDSKKVQISRDGQELEPQAAAQLLALWDRR
Links
Other
YTH
family RBPs
Other
Tetraodon nigroviridis
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
YTHDC2
Takifugu rubripes
ENSTRUG00000006717
N
0.933
ENSGACG00000018573
Gasterosteus aculeatus
ENSGACG00000018573
N
0.811
YTHDC2
Oryzias latipes
ENSORLG00000019098
N
0.800
YTHDC2
Anolis carolinensis
ENSACAG00000007754
N
0.711
YTHDC2
Gallus gallus
ENSGALG00000000189
N
0.711
YTHDC2
Taeniopygia guttata
ENSTGUG00000003755
N
0.700
YTHDC2
Tursiops truncatus
ENSTTRG00000003116
N
0.700