CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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YTHDC2
(
Gallus gallus
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
ENSGALG00000000189
T62033_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGALP00000000246
YTH
1239
1328
LIFSVQGSGHFQGFARMSSEIGCEQSQCWGSTGLGGVFKVEWIRKESIPFQFTHHLLNPWNDNKEVQISRDGQELEPQIGEQLLKLWDHT
Links
Other
YTH
family RBPs
Other
Gallus gallus
RBPs
40 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
YTHDC2
Anolis carolinensis
ENSACAG00000007754
N
0.878
YTHDC2
Tursiops truncatus
ENSTTRG00000003116
N
0.856
YTHDC2
Taeniopygia guttata
ENSTGUG00000003755
N
0.856
YTHDC2
Myotis lucifugus
ENSMLUG00000006106
N
0.856
YTHDC2
Pteropus vampyrus
ENSPVAG00000012364
N
0.844
YTHDC2
Sorex araneus
ENSSARG00000000924
N
0.844
YTHDC2
Gorilla gorilla
ENSGGOG00000014407
N
0.844
YTHDC2
Sus scrofa
ENSSSCG00000014211
N
0.844
YTHDC2
Tarsius syrichta
ENSTSYG00000009634
N
0.844
YTHDC2
Pan troglodytes
ENSPTRG00000017143
N
0.844
YTHDC2
Equus caballus
ENSECAG00000020630
N
0.844
YTHDC2
Cavia porcellus
ENSCPOG00000000272
N
0.844
YTHDC2
Callithrix jacchus
ENSCJAG00000016598
N
0.844
YTHDC2
Bos taurus
ENSBTAG00000014099
N
0.844
YTHDC2
Echinops telfairi
ENSETEG00000013681
N
0.844
YTHDC2
Tupaia belangeri
ENSTBEG00000006872
N
0.844
YTHDC2
Monodelphis domestica
ENSMODG00000015671
N
0.844
YTHDC2
Oryctolagus cuniculus
ENSOCUG00000012096
N
0.844
Ythdc2
Mus musculus
ENSMUSG00000034653
N
0.844
ENSPPYG00000015691
Pongo pygmaeus
ENSPPYG00000015691
N
0.844
YTHDC2
Macaca mulatta
ENSMMUG00000001376
N
0.844
YTHDC2
Loxodonta africana
ENSLAFG00000003538
N
0.844
YTHDC2
Macropus eugenii
ENSMEUG00000004414
N
0.844
YTHDC2
Homo sapiens
ENSG00000047188
N
0.833
YTHDC2
Vicugna pacos
ENSVPAG00000007516
N
0.833
YTHDC2
Canis familiaris
ENSCAFG00000000224
N
0.833
YTHDC2
Ochotona princeps
ENSOPRG00000000462
N
0.833
ythdc2
Xenopus tropicalis
ENSXETG00000021517
N
0.822
ENSOANG00000005058
Ornithorhynchus anatinus
ENSOANG00000005058
N
0.822
YTHDC2
Procavia capensis
ENSPCAG00000007733
N
0.789
YTHDC2
Oryzias latipes
ENSORLG00000019098
N
0.744
YTHDC2
Microcebus murinus
ENSMICG00000004030
N
0.722
YTHDC2
Takifugu rubripes
ENSTRUG00000006717
N
0.722
Ythdc2
Dipodomys ordii
ENSDORG00000007057
N
0.711
YTHDC2
Otolemur garnettii
ENSOGAG00000001618
N
0.711
YTHDC2
Tetraodon nigroviridis
ENSTNIG00000003707
N
0.711
ENSGACG00000018573
Gasterosteus aculeatus
ENSGACG00000018573
N
0.711
YTHDC2
Dasypus novemcinctus
ENSDNOG00000012198
N
0.711
e_gw.87.3.1
Nematostella vectensis
e_gw.87.3.1
N
0.700
Ame_R012491
Ailuropoda melanoleuca
Ame_R012491
N
0.700