MDP0000130160 (Malus x domestica)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		MDP0000130160 T00222_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000130160 CCCH ZF 37 54
MDP0000130160 CCCH ZF 96 121
MDP0000130160 KH 167 229
MDP0000130160 CCCH ZF 259 284

Links

Other CCCH ZF,KH family RBPs
Other Malus x domestica RBPs

42 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAI23362 Xenopus laevis AAI23362 N 0.000
Ame_R000880 Ailuropoda melanoleuca Ame_R000880 N 0.000
SNRNP35 Anolis carolinensis ENSACAG00000015421 N 0.000
U1SBP_BOVIN Bos taurus ENSBTAG00000008060 N 0.000
SNRNP35 Canis familiaris ENSCAFG00000007484 N 0.000
SNRNP35 Choloepus hoffmanni ENSCHOG00000006263 N 0.000
LOC100415261 Callithrix jacchus ENSCJAG00000007131 N 0.000
SNRNP35 Cavia porcellus ENSCPOG00000002548 N 0.000
snrnp35 Danio rerio ENSDARG00000044426 N 0.000
LOC100059055 Equus caballus ENSECAG00000006080 N 0.000
SNRNP35 Erinaceus europaeus ENSEEUG00000011544 N 0.000
SNRNP35 Felis catus ENSFCAG00000001159 N 0.000
SNRNP35 Homo sapiens ENSG00000184209 N 0.000
SNRNP35 Gasterosteus aculeatus ENSGACG00000020631 N 0.000
SNRNP35 Gallus gallus ENSGALG00000003318 N 0.000
SNRNP35 Gorilla gorilla ENSGGOG00000015936 N 0.000
SNRNP35 Loxodonta africana ENSLAFG00000022302 N 0.000
SNRNP35 Meleagris gallopavo ENSMGAG00000003241 N 0.000
SNRNP35 Macaca mulatta ENSMMUG00000008411 N 0.000
SNRNP35 Monodelphis domestica ENSMODG00000012481 N 0.000
Snrnp35 Mus musculus ENSMUSG00000029402 N 0.000
SNRNP35 Ornithorhynchus anatinus ENSOANG00000002697 N 0.000
SNRNP35 Oryctolagus cuniculus ENSOCUG00000021248 N 0.000
SNRNP35 Otolemur garnettii ENSOGAG00000011301 N 0.000
SNRNP35 Ochotona princeps ENSOPRG00000011119 N 0.000
SNRNP35 Oryzias latipes ENSORLG00000005673 N 0.000
SNRNP35 Procavia capensis ENSPCAG00000011478 N 0.000
ENSPPYG00000005088 Pongo pygmaeus ENSPPYG00000005088 N 0.000
SNRNP35 Pan troglodytes ENSPTRG00000023573 N 0.000
SNRNP35 Pteropus vampyrus ENSPVAG00000015317 N 0.000
Snrnp35 Rattus norvegicus ENSRNOG00000001060 N 0.000
SNRNP35 Sorex araneus ENSSARG00000012656 N 0.000
SNRNP35 Tupaia belangeri ENSTBEG00000002309 N 0.000
SNRNP35 Taeniopygia guttata ENSTGUG00000005364 N 0.000
B5G0X9_TAEGU Taeniopygia guttata ENSTGUG00000015471 N 0.000
SNRNP35 Tetraodon nigroviridis ENSTNIG00000009984 N 0.000
SNRNP35 Takifugu rubripes ENSTRUG00000017100 N 0.000
Q05AT9 Xenopus laevis Q05AT9 N 0.000