CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SNRNP35
(
Taeniopygia guttata
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTGUG00000005364
T41903_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTGUP00000005513
RRM
53
123
LFVARLNLQTTEEKLKEVFSRYGDIRKIRLVRDLVTGFSKGYAFIEYKEERALLKAHRDANRLVIDQHEIF
Links
Other
RRM
family RBPs
Other
Taeniopygia guttata
RBPs
38 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
B5G0X9_TAEGU
Taeniopygia guttata
ENSTGUG00000015471
N
1.000
SNRNP35
Gallus gallus
ENSGALG00000003318
N
0.986
SNRNP35
Meleagris gallopavo
ENSMGAG00000003241
N
0.972
SNRNP35
Anolis carolinensis
ENSACAG00000015421
N
0.944
SNRNP35
Ornithorhynchus anatinus
ENSOANG00000002697
N
0.915
ENSDORG00000001859
Dipodomys ordii
ENSDORG00000001859
N
0.915
Snrnp35
Rattus norvegicus
ENSRNOG00000001060
N
0.915
SNRNP35
Choloepus hoffmanni
ENSCHOG00000006263
N
0.901
Snrnp35
Mus musculus
ENSMUSG00000029402
N
0.901
SNRNP35
Pteropus vampyrus
ENSPVAG00000015317
N
0.901
SNRNP35
Sorex araneus
ENSSARG00000012656
N
0.887
SNRNP35
Felis catus
ENSFCAG00000001159
N
0.887
SNRNP35
Monodelphis domestica
ENSMODG00000012481
N
0.887
LOC100059055
Equus caballus
ENSECAG00000006080
N
0.887
SNRNP35
Tupaia belangeri
ENSTBEG00000002309
N
0.887
Ame_R000880
Ailuropoda melanoleuca
Ame_R000880
N
0.887
U1SBP_BOVIN
Bos taurus
ENSBTAG00000008060
N
0.887
SNRNP35
Homo sapiens
ENSG00000184209
N
0.873
SNRNP35
Erinaceus europaeus
ENSEEUG00000011544
N
0.873
SNRNP35
Oryctolagus cuniculus
ENSOCUG00000021248
N
0.873
SNRNP35
Ochotona princeps
ENSOPRG00000011119
N
0.873
SNRNP35
Procavia capensis
ENSPCAG00000011478
N
0.873
SNRNP35
Pan troglodytes
ENSPTRG00000023573
N
0.873
ENSPPYG00000005088
Pongo pygmaeus
ENSPPYG00000005088
N
0.873
SNRNP35
Canis familiaris
ENSCAFG00000007484
N
0.873
SNRNP35
Macaca mulatta
ENSMMUG00000008411
N
0.873
SNRNP35
Loxodonta africana
ENSLAFG00000022302
N
0.873
SNRNP35
Cavia porcellus
ENSCPOG00000002548
N
0.873
SNRNP35
Gorilla gorilla
ENSGGOG00000015936
N
0.873
SNRNP35
Otolemur garnettii
ENSOGAG00000011301
N
0.859
LOC100415261
Callithrix jacchus
ENSCJAG00000007131
N
0.845
AAI23362
Xenopus laevis
AAI23362
N
0.803
Q05AT9
Xenopus laevis
Q05AT9
N
0.803
SNRNP35
Takifugu rubripes
ENSTRUG00000017100
N
0.746
snrnp35
Danio rerio
ENSDARG00000044426
N
0.732
SNRNP35
Tetraodon nigroviridis
ENSTNIG00000009984
N
0.732
SNRNP35
Oryzias latipes
ENSORLG00000005673
N
0.732
SNRNP35
Gasterosteus aculeatus
ENSGACG00000020631
N
0.704