CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SNRNP35
(
Otolemur garnettii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOGAG00000011301
T39879_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOGAP00000010121
RRM
104
174
LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERSVIKAYRDADGLVIDQHEIF
Links
Other
RRM
family RBPs
Other
Otolemur garnettii
RBPs
38 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SNRNP35
Pan troglodytes
ENSPTRG00000023573
N
0.986
SNRNP35
Erinaceus europaeus
ENSEEUG00000011544
N
0.986
ENSPPYG00000005088
Pongo pygmaeus
ENSPPYG00000005088
N
0.986
SNRNP35
Homo sapiens
ENSG00000184209
N
0.986
SNRNP35
Gorilla gorilla
ENSGGOG00000015936
N
0.986
SNRNP35
Macaca mulatta
ENSMMUG00000008411
N
0.986
LOC100059055
Equus caballus
ENSECAG00000006080
N
0.972
SNRNP35
Felis catus
ENSFCAG00000001159
N
0.972
SNRNP35
Tupaia belangeri
ENSTBEG00000002309
N
0.972
Ame_R000880
Ailuropoda melanoleuca
Ame_R000880
N
0.972
SNRNP35
Choloepus hoffmanni
ENSCHOG00000006263
N
0.958
LOC100415261
Callithrix jacchus
ENSCJAG00000007131
N
0.958
SNRNP35
Canis familiaris
ENSCAFG00000007484
N
0.958
SNRNP35
Pteropus vampyrus
ENSPVAG00000015317
N
0.958
Snrnp35
Rattus norvegicus
ENSRNOG00000001060
N
0.944
ENSDORG00000001859
Dipodomys ordii
ENSDORG00000001859
N
0.944
U1SBP_BOVIN
Bos taurus
ENSBTAG00000008060
N
0.944
Snrnp35
Mus musculus
ENSMUSG00000029402
N
0.944
SNRNP35
Oryctolagus cuniculus
ENSOCUG00000021248
N
0.930
SNRNP35
Procavia capensis
ENSPCAG00000011478
N
0.930
SNRNP35
Ochotona princeps
ENSOPRG00000011119
N
0.930
SNRNP35
Loxodonta africana
ENSLAFG00000022302
N
0.930
SNRNP35
Sorex araneus
ENSSARG00000012656
N
0.915
SNRNP35
Cavia porcellus
ENSCPOG00000002548
N
0.901
SNRNP35
Ornithorhynchus anatinus
ENSOANG00000002697
N
0.887
SNRNP35
Monodelphis domestica
ENSMODG00000012481
N
0.859
SNRNP35
Taeniopygia guttata
ENSTGUG00000005364
N
0.859
B5G0X9_TAEGU
Taeniopygia guttata
ENSTGUG00000015471
N
0.859
SNRNP35
Anolis carolinensis
ENSACAG00000015421
N
0.859
SNRNP35
Gallus gallus
ENSGALG00000003318
N
0.845
SNRNP35
Meleagris gallopavo
ENSMGAG00000003241
N
0.831
SNRNP35
Tetraodon nigroviridis
ENSTNIG00000009984
N
0.775
SNRNP35
Takifugu rubripes
ENSTRUG00000017100
N
0.761
SNRNP35
Gasterosteus aculeatus
ENSGACG00000020631
N
0.746
AAI23362
Xenopus laevis
AAI23362
N
0.732
SNRNP35
Oryzias latipes
ENSORLG00000005673
N
0.732
Q05AT9
Xenopus laevis
Q05AT9
N
0.732
snrnp35
Danio rerio
ENSDARG00000044426
N
0.718