CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ARB_03836
(
Arthroderma benhamiae
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ARB_03836
T00252_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ARB_03836
CCCH ZF
264
288
AERCKNYDNMGFCVLGSTCPYQHGQ
ARB_03836
RRM
361
425
IVVEQIPEDKFDEATVREFFSEFGEITEVTMKPYKHLALVKYDSYDAAHRAWSSPKVIFDNRFVK
ARB_03836
RRM
611
665
VAISGVEFDTNRDEALRQYLLGIGEYESIDPSPDRPGALVVSFKDRYVAEKLVHG
Links
Other
CCCH ZF,RRM
family RBPs
Other
Arthroderma benhamiae
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MCYG_03501
Microsporum canis
MCYG_03501
N
0.952
MGYG_03105
Microsporum gypseum
MGYG_03105
N
0.986
TEQG_01215
Trichophyton equinum
TEQG_01215
N
1.000
TERG_04929
Trichophyton rubrum
TERG_04929
N
0.986
TESG_05938
Trichophyton tonsurans
TESG_05938
N
1.000
TRV_01755
Trichophyton verrucosum
TRV_01755
N
0.993