CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TESG_05938
(
Trichophyton tonsurans
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
TESG_05938
T00338_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
TESG_05938T0
CCCH ZF
259
283
AERCKNYDNMGFCVLGSTCPYQHGQ
TESG_05938T0
RRM
356
420
IVVEQIPEDKFDEATVREFFSEFGEITEVTMKPYKHLALVKYDSYDAAHRAWSSPKVIFDNRFVK
TESG_05938T0
RRM
606
660
VAISGVEFDTNRDEALRQYLLGIGEYESIDPSPDRPGALVVSFKDRYVAEKLVHG
Links
Other
CCCH ZF,RRM
family RBPs
Other
Trichophyton tonsurans
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ARB_03836
Arthroderma benhamiae
ARB_03836
N
1.000
TEQG_01215
Trichophyton equinum
TEQG_01215
N
1.000
TRV_01755
Trichophyton verrucosum
TRV_01755
N
0.993
TERG_04929
Trichophyton rubrum
TERG_04929
N
0.986
MGYG_03105
Microsporum gypseum
MGYG_03105
N
0.986
MCYG_03501
Microsporum canis
MCYG_03501
N
0.952