CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MCYG_03501
(
Microsporum canis
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
MCYG_03501
T00296_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
MCYG_03501T0
CCCH ZF
260
284
AERCKDYDTMGFCVLGSTCPYQHGQ
MCYG_03501T0
RRM
361
425
IVVEQIPEDKFDEATVREFFSDFGEITEITMKPYKHLALVKYDSYDAAHRAWSSPKVIFDNRFVK
MCYG_03501T0
RRM
611
664
VAISGVEFDTNRDEALRQYLLGIGEYESVDPSPDRPGALVVSFKDRYVAEKLFH
Links
Other
CCCH ZF,RRM
family RBPs
Other
Microsporum canis
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MGYG_03105
Microsporum gypseum
MGYG_03105
N
0.965
ARB_03836
Arthroderma benhamiae
ARB_03836
N
0.952
TESG_05938
Trichophyton tonsurans
TESG_05938
N
0.952
TERG_04929
Trichophyton rubrum
TERG_04929
N
0.952
TEQG_01215
Trichophyton equinum
TEQG_01215
N
0.952
TRV_01755
Trichophyton verrucosum
TRV_01755
N
0.945