XM_002876131.1 (Arabidopsis lyrata)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		fgenesh2_kg.5__1664__AT3G52980.1 T00712_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.5__1664__AT3G52980.1 CCCH ZF 147 167
fgenesh2_kg.5__1664__AT3G52980.1 RRM 292 352

Links

Other CCCH ZF,RRM family RBPs
Other Arabidopsis lyrata RBPs

16 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
27613.m000645 Ricinus communis 27613.m000645 N 0.736
29223.m000023 Ricinus communis 29223.m000023 N 0.747
AT2G05160 Arabidopsis thaliana AT2G05160-TAIR-G N 0.793
AT3G52980 Arabidopsis thaliana AT3G52980-TAIR-G N 0.720
cassava31399.valid.m1 Manihot esculenta cassava31399.valid.m1 N 0.759
cassava31400.valid.m1 Manihot esculenta cassava31400.valid.m1 N 0.759
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.782
cassava7063.valid.m1 Manihot esculenta cassava7063.valid.m1 N 0.747
GSVIVG00037782001 Vitis vinifera GSVIVG00037782001 N 0.736
MDP0000214614 Malus x domestica MDP0000214614 N 0.747
MDP0000906147 Malus x domestica MDP0000906147 N 0.759
PK20504.1 Cannabis sativa PK20504.1 N 0.759
B9GTF9_POPTR Populus trichocarpa POPTR_0002s22240 N 0.810
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.793
ppa003564m Prunus persica ppa003564m N 0.747
ppa019338m Prunus persica ppa019338m N 0.747