27613.m000645 (Ricinus communis)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		27613.m000645 T00814_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
27613.m000645 CCCH ZF 190 214
27613.m000645 RRM 351 411

Links

Other CCCH ZF,RRM family RBPs
Other Ricinus communis RBPs

21 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava31400.valid.m1 Manihot esculenta cassava31400.valid.m1 N 0.885
cassava31399.valid.m1 Manihot esculenta cassava31399.valid.m1 N 0.885
cassava7063.valid.m1 Manihot esculenta cassava7063.valid.m1 N 0.884
ppa019338m Prunus persica ppa019338m N 0.828
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.816
MDP0000214614 Malus x domestica MDP0000214614 N 0.814
PK01281.1 Cannabis sativa PK01281.1 N 0.814
ppa003564m Prunus persica ppa003564m N 0.814
PK20504.1 Cannabis sativa PK20504.1 N 0.802
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.793
AT2G05160 Arabidopsis thaliana AT2G05160-TAIR-G N 0.793
MDP0000906147 Malus x domestica MDP0000906147 N 0.793
29223.m000023 Ricinus communis 29223.m000023 N 0.791
GSVIVG00037782001 Vitis vinifera GSVIVG00037782001 N 0.770
Medtr5g102170 Medicago truncatula Medtr5g102170 N 0.744
B9GTF9_POPTR Populus trichocarpa POPTR_0002s22240 N 0.736
XM_002876131.1 Arabidopsis lyrata fgenesh2_kg.5__1664__AT3G52980.1 N 0.736
Glyma14g01930.1 Glycine max Glyma14g01930.1 N 0.736
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.709
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.709
mgf003557m Mimulus guttatus mgf003557m N 0.701