CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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EDO07135.1
(
Babesia bovis
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
EDO07135.1
T01055_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
EDO07135.1
CCCH ZF
13
37
EDRVNCPFYWKIGACRHGDQCSRAH
EDO07135.1
RRM
83
141
YEEVFLELMKYGEIEDMVVCDNIGDHIIGNVYVKYRDENSAAHAISMLSGRFYGGKPIQ
EDO07135.1
CCCH ZF
150
175
FREARCRQFVEGQCRRGGYCNFMHIK
Links
Other
CCCH ZF,RRM
family RBPs
Other
Babesia bovis
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CMU_011770
Cryptosporidium muris
CMU_011770
N
0.745
estExt_fgenesh1_kg.C_153200001
Phytophthora capsici
estExt_fgenesh1_kg.C_153200001
N
0.705
PBANKA_092880
Plasmodium berghei
PBANKA_092880
N
0.855
PCHAS_091550
Plasmodium chabaudi
PCHAS_091550
N
0.855
PF11_0200
Plasmodium falciparum
PF11_0200
N
0.855
PITG_05688
Phytophthora infestans
PITG_05688
N
0.705
PKH_091670
Plasmodium knowlesi
PKH_091670
N
0.845
PVX_091600
Plasmodium vivax
PVX_091600
N
0.845
PY04677
Plasmodium yoelii
PY04677
N
0.845
s_458600
Phytophthora sojae
s_458600
N
0.705
TA03790
Theileria annulata
TA03790
N
0.873
TGGT1_069020
Toxoplasma gondii
TGGT1_069020
N
0.818
TGME49_036910
Toxoplasma gondii
TGME49_036910
N
0.818
TGVEG_060320
Toxoplasma gondii
TGVEG_060320
N
0.818
TP03_0294
Theileria parva
TP03_0294
N
0.864