UM01308 (Ustilago maydis)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 UM01308 T01683_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
UM01308 CCCH ZF 1 24

Links

Other CCCH ZF family RBPs
Other Ustilago maydis RBPs

1 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29801.m003231 Ricinus communis 29801.m003231 N 0.000
AT3G02820 Arabidopsis thaliana AT3G02820-TAIR-G N 0.000
BGIOSIBCE008748 Oryza indica BGIOSIBCE008748 N 0.000
BRADI1G32480 Brachypodium distachyon BRADI1G32480 N 0.000
cassava11257.m1 Manihot esculenta cassava11257.m1 N 0.000
Cucsa.132860 Cucumis sativus Cucsa.132860 N 0.000
estExt_fgenesh1_pg.C_5350001 Physcomitrella patens estExt_fgenesh1_pg.C_5350001 N 0.000
fgenesh2_pg.C_scaffold_80000055 Selaginella moellendorfii fgenesh2_pg.C_scaffold_80000055 N 0.000
Glyma11g10610.1 Glycine max Glyma11g10610.1 N 0.000
Glyma12g02890.1 Glycine max Glyma12g02890.1 N 0.000
GRMZM2G057571 Zea mays GRMZM2G057571 N 0.000
GSVIVG00010231001 Vitis vinifera GSVIVG00010231001 N 0.000
LjT04D09.40.nd Lotus japonicus LjT04D09.40.nd N 0.000
LOC_Os02g52460 Oryza sativa LOC_Os02g52460 N 0.000
MDP0000186936 Malus x domestica MDP0000186936 N 0.000
MDP0000277069 Malus x domestica MDP0000277069 N 0.000
MDP0000284515 Malus x domestica MDP0000284515 N 0.000
Medtr4g100980 Medicago truncatula Medtr4g100980 N 0.000
mgf001569m Mimulus guttatus mgf001569m N 0.000
PK15492.1 Cannabis sativa PK15492.1 N 0.000
B9HVL9_POPTR Populus trichocarpa POPTR_0010s10750 N 0.000
ppa009221m Prunus persica ppa009221m N 0.000
Sb01g011910 Sorghum bicolor Sb01g011910 N 0.000
SB10G031080 Sorghum bicolor Sb10g031080 N 0.000
XM_002882206.1 Arabidopsis lyrata scaffold_300229.1 N 0.000