29801.m003231 (Ricinus communis)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 29801.m003231 T13207_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
29801.m003231 CCHC ZF 9 26

Links

Other CCHC ZF family RBPs
Other Ricinus communis RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9HVL9_POPTR Populus trichocarpa POPTR_0010s10750 N 1.000
cassava11257.m1 Manihot esculenta cassava11257.m1 N 1.000
ppa009221m Prunus persica ppa009221m N 0.944
MDP0000284515 Malus x domestica MDP0000284515 N 0.944
PK15492.1 Cannabis sativa PK15492.1 N 0.944
BGIOSIBCE008748 Oryza indica BGIOSIBCE008748 N 0.944
LOC_Os02g52460 Oryza sativa LOC_Os02g52460 N 0.944
GSVIVG00010231001 Vitis vinifera GSVIVG00010231001 N 0.944
LjT04D09.40.nd Lotus japonicus LjT04D09.40.nd N 0.944
MDP0000277069 Malus x domestica MDP0000277069 N 0.944
Medtr4g100980 Medicago truncatula Medtr4g100980 N 0.944
Glyma12g02890.1 Glycine max Glyma12g02890.1 N 0.944
mgf001569m Mimulus guttatus mgf001569m N 0.944
XM_002882206.1 Arabidopsis lyrata scaffold_300229.1 N 0.889
BRADI1G32480 Brachypodium distachyon BRADI1G32480 N 0.889
SB10G031080 Sorghum bicolor Sb10g031080 N 0.889
estExt_fgenesh1_pg.C_5350001 Physcomitrella patens estExt_fgenesh1_pg.C_5350001 N 0.889
BRADI1G29530 Brachypodium distachyon BRADI1G29530 N 0.889
Glyma11g10610.1 Glycine max Glyma11g10610.1 N 0.889
GRMZM2G057571 Zea mays GRMZM2G057571 N 0.889
AT3G02820 Arabidopsis thaliana AT3G02820-TAIR-G N 0.889
fgenesh2_pg.C_scaffold_80000055 Selaginella moellendorfii fgenesh2_pg.C_scaffold_80000055 N 0.833
Cucsa.132860 Cucumis sativus Cucsa.132860 N 0.833
MDP0000186936 Malus x domestica MDP0000186936 N 0.722
IGS.gm_7_00451 Chlorella NC64A IGS.gm_7_00451 N 0.722