XM_002882206.1 (Arabidopsis lyrata)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 scaffold_300229.1 T12934_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
scaffold_300229.1 CCHC ZF 6 23

Links

Other CCHC ZF family RBPs
Other Arabidopsis lyrata RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT3G02820 Arabidopsis thaliana AT3G02820-TAIR-G N 1.000
GRMZM2G057571 Zea mays GRMZM2G057571 N 1.000
BRADI1G32480 Brachypodium distachyon BRADI1G32480 N 1.000
BRADI1G29530 Brachypodium distachyon BRADI1G29530 N 1.000
SB10G031080 Sorghum bicolor Sb10g031080 N 1.000
PK15492.1 Cannabis sativa PK15492.1 N 0.944
ppa009221m Prunus persica ppa009221m N 0.944
LOC_Os02g52460 Oryza sativa LOC_Os02g52460 N 0.944
MDP0000284515 Malus x domestica MDP0000284515 N 0.944
BGIOSIBCE008748 Oryza indica BGIOSIBCE008748 N 0.944
GSVIVG00010231001 Vitis vinifera GSVIVG00010231001 N 0.944
MDP0000277069 Malus x domestica MDP0000277069 N 0.944
mgf001569m Mimulus guttatus mgf001569m N 0.944
Cucsa.132860 Cucumis sativus Cucsa.132860 N 0.944
LjT04D09.40.nd Lotus japonicus LjT04D09.40.nd N 0.944
cassava11257.m1 Manihot esculenta cassava11257.m1 N 0.889
estExt_fgenesh1_pg.C_5350001 Physcomitrella patens estExt_fgenesh1_pg.C_5350001 N 0.889
B9HVL9_POPTR Populus trichocarpa POPTR_0010s10750 N 0.889
Glyma12g02890.1 Glycine max Glyma12g02890.1 N 0.889
Medtr4g100980 Medicago truncatula Medtr4g100980 N 0.889
29801.m003231 Ricinus communis 29801.m003231 N 0.889
Glyma11g10610.1 Glycine max Glyma11g10610.1 N 0.833
MDP0000186936 Malus x domestica MDP0000186936 N 0.833
fgenesh2_pg.C_scaffold_80000055 Selaginella moellendorfii fgenesh2_pg.C_scaffold_80000055 N 0.778
Sb01g011910 Sorghum bicolor Sb01g011910 N 0.778