CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ZGPAT
(
Canis familiaris
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSCAFG00000013056
T02302_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCAFP00000019223
CCCH ZF
165
189
SLKPCPFFLEGKCRFQDSCRFSHGQ
Links
Other
CCCH ZF
family RBPs
Other
Canis familiaris
RBPs
24 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH84897
Xenopus laevis
AAH84897
N
0.731
Ame_R014267
Ailuropoda melanoleuca
Ame_R014267
N
0.920
ZGPAT_BOVIN
Bos taurus
ENSBTAG00000007498
N
0.880
ZGPAT
Callithrix jacchus
ENSCJAG00000010398
N
0.880
ZGPAT
Cavia porcellus
ENSCPOG00000014427
N
0.880
ZGPAT
Dasypus novemcinctus
ENSDNOG00000025874
N
0.880
ZGPAT
Felis catus
ENSFCAG00000001173
N
0.920
ZGPAT
Homo sapiens
ENSG00000197114
N
0.880
ZGPAT
Gorilla gorilla
ENSGGOG00000004801
N
0.880
LOC719499
Macaca mulatta
ENSMMUG00000000171
N
0.880
ZGPAT
Monodelphis domestica
ENSMODG00000017016
N
0.880
Zgpat
Mus musculus
ENSMUSG00000027582
N
0.880
ZGPAT
Ornithorhynchus anatinus
ENSOANG00000004932
N
0.880
ZGPAT
Otolemur garnettii
ENSOGAG00000004502
N
0.880
ZGPAT
Procavia capensis
ENSPCAG00000001883
N
0.920
ENSPPYG00000011246
Pongo pygmaeus
ENSPPYG00000011246
N
0.880
ZGPAT
Pan troglodytes
ENSPTRG00000013750
N
0.880
ZGPAT
Pteropus vampyrus
ENSPVAG00000013489
N
0.800
Lime1
Rattus norvegicus
ENSRNOG00000014235
N
0.880
ZGPAT
Spermophilus tridecemlineatus
ENSSTOG00000011986
N
0.960
ZGPAT
Tetraodon nigroviridis
ENSTNIG00000004165
N
0.840
ZGPAT
Takifugu rubripes
ENSTRUG00000010488
N
0.808
ZGPAT
Tursiops truncatus
ENSTTRG00000012223
N
0.960
Q5U4Z3
Xenopus laevis
Q5U4Z3
N
0.731