CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ZGPAT
(
Gorilla gorilla
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSGGOG00000004801
T02748_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGGOP00000004705
CCCH ZF
176
200
SLKPCPFFLEGKCRFKENCRFSHGQ
ENSGGOP00000018406
CCCH ZF
176
200
SLKPCPFFLEGKCRFKENCRFSHGQ
ENSGGOP00000026125
CCCH ZF
165
189
SLKPCPFFLEGKCRFKENCRFSHGQ
Links
Other
CCCH ZF
family RBPs
Other
Gorilla gorilla
RBPs
25 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ZGPAT
Cavia porcellus
ENSCPOG00000014427
N
1.000
ZGPAT
Pan troglodytes
ENSPTRG00000013750
N
1.000
ZGPAT
Homo sapiens
ENSG00000197114
N
1.000
ZGPAT
Callithrix jacchus
ENSCJAG00000010398
N
1.000
ZGPAT
Dasypus novemcinctus
ENSDNOG00000025874
N
1.000
ENSPPYG00000011246
Pongo pygmaeus
ENSPPYG00000011246
N
1.000
Lime1
Rattus norvegicus
ENSRNOG00000014235
N
1.000
Zgpat
Mus musculus
ENSMUSG00000027582
N
1.000
ZGPAT
Monodelphis domestica
ENSMODG00000017016
N
1.000
ZGPAT
Ornithorhynchus anatinus
ENSOANG00000004932
N
1.000
LOC719499
Macaca mulatta
ENSMMUG00000000171
N
1.000
ZGPAT
Felis catus
ENSFCAG00000001173
N
0.960
Ame_R014267
Ailuropoda melanoleuca
Ame_R014267
N
0.960
ZGPAT
Procavia capensis
ENSPCAG00000001883
N
0.960
ZGPAT
Otolemur garnettii
ENSOGAG00000004502
N
0.960
ZGPAT_BOVIN
Bos taurus
ENSBTAG00000007498
N
0.920
ZGPAT
Tursiops truncatus
ENSTTRG00000012223
N
0.920
ZGPAT
Spermophilus tridecemlineatus
ENSSTOG00000011986
N
0.920
ZGPAT
Pteropus vampyrus
ENSPVAG00000013489
N
0.920
ZGPAT
Canis familiaris
ENSCAFG00000013056
N
0.880
ZGPAT
Tetraodon nigroviridis
ENSTNIG00000004165
N
0.760
ZGPAT
Takifugu rubripes
ENSTRUG00000010488
N
0.731
AAH84897
Xenopus laevis
AAH84897
N
0.731
Q5U4Z3
Xenopus laevis
Q5U4Z3
N
0.731