CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ZGPAT
(
Spermophilus tridecemlineatus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSSTOG00000011986
T03415_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSTOP00000010754
CCCH ZF
52
76
SLKPCPFFLEGKCRFKDSCRFSHGQ
Links
Other
CCCH ZF
family RBPs
Other
Spermophilus tridecemlineatus
RBPs
24 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ZGPAT
Canis familiaris
ENSCAFG00000013056
N
0.960
ZGPAT
Ornithorhynchus anatinus
ENSOANG00000004932
N
0.920
ZGPAT
Dasypus novemcinctus
ENSDNOG00000025874
N
0.920
ZGPAT
Homo sapiens
ENSG00000197114
N
0.920
ZGPAT
Gorilla gorilla
ENSGGOG00000004801
N
0.920
ZGPAT
Monodelphis domestica
ENSMODG00000017016
N
0.920
LOC719499
Macaca mulatta
ENSMMUG00000000171
N
0.920
ZGPAT
Cavia porcellus
ENSCPOG00000014427
N
0.920
ZGPAT
Callithrix jacchus
ENSCJAG00000010398
N
0.920
ENSPPYG00000011246
Pongo pygmaeus
ENSPPYG00000011246
N
0.920
ZGPAT
Pan troglodytes
ENSPTRG00000013750
N
0.920
Lime1
Rattus norvegicus
ENSRNOG00000014235
N
0.920
ZGPAT
Otolemur garnettii
ENSOGAG00000004502
N
0.920
Zgpat
Mus musculus
ENSMUSG00000027582
N
0.920
ZGPAT
Tursiops truncatus
ENSTTRG00000012223
N
0.920
ZGPAT
Procavia capensis
ENSPCAG00000001883
N
0.880
ZGPAT
Felis catus
ENSFCAG00000001173
N
0.880
Ame_R014267
Ailuropoda melanoleuca
Ame_R014267
N
0.880
ZGPAT
Tetraodon nigroviridis
ENSTNIG00000004165
N
0.840
ZGPAT_BOVIN
Bos taurus
ENSBTAG00000007498
N
0.840
ZGPAT
Pteropus vampyrus
ENSPVAG00000013489
N
0.840
ZGPAT
Takifugu rubripes
ENSTRUG00000010488
N
0.808
AAH84897
Xenopus laevis
AAH84897
N
0.731
Q5U4Z3
Xenopus laevis
Q5U4Z3
N
0.731