CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Q5U4Z3
(
Xenopus laevis
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
Q5U4Z3
T06726_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Q5U4Z3
CCCH ZF
184
209
KAMKPCPFFLDGKCLFNDNCRFSHGQ
Links
Other
CCCH ZF
family RBPs
Other
Xenopus laevis
RBPs
19 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH84897
Xenopus laevis
AAH84897
N
1.000
ZGPAT
Pan troglodytes
ENSPTRG00000013750
N
0.731
ENSPPYG00000011246
Pongo pygmaeus
ENSPPYG00000011246
N
0.731
ZGPAT
Procavia capensis
ENSPCAG00000001883
N
0.731
Lime1
Rattus norvegicus
ENSRNOG00000014235
N
0.731
ZGPAT
Spermophilus tridecemlineatus
ENSSTOG00000011986
N
0.731
Ame_R014267
Ailuropoda melanoleuca
Ame_R014267
N
0.731
ZGPAT
Takifugu rubripes
ENSTRUG00000010488
N
0.731
ZGPAT
Ornithorhynchus anatinus
ENSOANG00000004932
N
0.731
Zgpat
Mus musculus
ENSMUSG00000027582
N
0.731
ZGPAT
Dasypus novemcinctus
ENSDNOG00000025874
N
0.731
ZGPAT
Cavia porcellus
ENSCPOG00000014427
N
0.731
ZGPAT
Callithrix jacchus
ENSCJAG00000010398
N
0.731
ZGPAT
Felis catus
ENSFCAG00000001173
N
0.731
ZGPAT
Homo sapiens
ENSG00000197114
N
0.731
ZGPAT
Monodelphis domestica
ENSMODG00000017016
N
0.731
LOC719499
Macaca mulatta
ENSMMUG00000000171
N
0.731
ZGPAT
Gorilla gorilla
ENSGGOG00000004801
N
0.731
ZGPAT
Canis familiaris
ENSCAFG00000013056
N
0.731