CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MKRN2
(
Procavia capensis
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSPCAG00000016175
T03190_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPCAP00000015121
CCCH ZF
3
28
TKQVTCRYFMHGVCREGNQCLFSHDL
ENSPCAP00000015121
CCCH ZF
34
57
STICKYYQKGCCAYGARCRYDHTR
ENSPCAP00000015121
CCCH ZF
166
191
SGQQLCPYAAAGECHFGDTCVYLHGD
ENSPCAP00000015121
CCCH ZF
323
348
GKKACKYFEQGKGTCPFGSKCLYRHA
Links
Other
CCCH ZF
family RBPs
Other
Procavia capensis
RBPs
34 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R014090
Ailuropoda melanoleuca
Ame_R014090
N
0.000
A7Z062_BOVIN
Bos taurus
ENSBTAG00000014826
N
0.000
ZC3H7A
Canis familiaris
ENSCAFG00000018876
N
0.000
ZC3H7A
Choloepus hoffmanni
ENSCHOG00000005905
N
0.000
ZC3H7A
Callithrix jacchus
ENSCJAG00000008403
N
0.000
ZC3H7A
Cavia porcellus
ENSCPOG00000004454
N
0.000
Zc3h7a
Dipodomys ordii
ENSDORG00000013662
N
0.000
ZC3H7A
Equus caballus
ENSECAG00000003869
N
0.000
ZC3H7A
Homo sapiens
ENSG00000122299
N
0.000
ZC3H7A
Gorilla gorilla
ENSGGOG00000009732
N
0.000
ZC3H7A
Loxodonta africana
ENSLAFG00000004255
N
0.000
ZC3H7A
Myotis lucifugus
ENSMLUG00000016057
N
0.000
ZC3H7A
Macaca mulatta
ENSMMUG00000011242
N
0.000
ZC3H7A
Oryctolagus cuniculus
ENSOCUG00000017012
N
0.000
ZC3H7A
Otolemur garnettii
ENSOGAG00000010411
N
0.000
ZC3H7A
Ochotona princeps
ENSOPRG00000004406
N
0.000
ENSPPYG00000007111
Pongo pygmaeus
ENSPPYG00000007111
N
0.000
ZC3H7A
Pan troglodytes
ENSPTRG00000007776
N
0.000
ZC3H7A
Pteropus vampyrus
ENSPVAG00000015398
N
0.000
D3ZP12_RAT
Rattus norvegicus
ENSRNOG00000002420
N
0.000
ZC3H7A
Vicugna pacos
ENSVPAG00000006902
N
0.000