CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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NUPL2
(
Vicugna pacos
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSVPAG00000000609
T03606_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSVPAP00000000562
CCCH ZF
1
18
MTICQFFLQGRCRFGDRC
Links
Other
CCCH ZF
family RBPs
Other
Vicugna pacos
RBPs
33 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
22646_YPR107C
Saccharomyces mikatae
22646_YPR107C
N
0.000
23053_YPR107C
Saccharomyces paradoxus
23053_YPR107C
N
0.000
25937_YPR107C
Saccharomyces bayanus
25937_YPR107C
N
0.000
KLTH0D02948g
Kluyveromyces thermotolerans
KLTH0D02948g
N
0.000
Kwal_7234
Kluyveromyces waltii
Kwal_7234
N
0.000
SAKL0B09372g
Lachancea kluyveri
SAKL0B09372g
N
0.000
Skud_Contig1473.3
Saccharomyces kudriavzevii
Skud_Contig1473.3
N
0.000
YTH1
Saccharomyces cerevisiae
YPR107C
N
0.000
YTH1
Ashbya gossypii
YTH1
N
0.000
ZYRO0C17776g
Zygosaccharomyces rouxii
ZYRO0C17776g
N
0.000