23053_YPR107C (Saccharomyces paradoxus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 23053_YPR107C T05878_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
23053_YPR107C CCCH ZF 29 58
23053_YPR107C CCCH ZF 64 87
23053_YPR107C CCCH ZF 90 116
23053_YPR107C CCCH ZF 119 144
23053_YPR107C CCCH ZF 143 161

Links

Other CCCH ZF family RBPs
Other Saccharomyces paradoxus RBPs

12 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
25937_YPR107C Saccharomyces bayanus 25937_YPR107C N 1.000
22646_YPR107C Saccharomyces mikatae 22646_YPR107C N 1.000
YTH1 Saccharomyces cerevisiae YPR107C N 0.984
Skud_Contig1473.3 Saccharomyces kudriavzevii Skud_Contig1473.3 N 0.984
SAKL0B09372g Lachancea kluyveri SAKL0B09372g N 0.802
Kwal_7234 Kluyveromyces waltii Kwal_7234 N 0.770
ZYRO0C17776g Zygosaccharomyces rouxii ZYRO0C17776g N 0.770
KLTH0D02948g Kluyveromyces thermotolerans KLTH0D02948g N 0.746
CAGL0G01694g Candida glabrata CAGL0G01694g N 0.722
YTH1 Ashbya gossypii YTH1 N 0.722
KLLA0F08129g Kluyveromyces lactis KLLA0F08129g N 0.714
Scas_Contig705.28 Saccharomyces castellii Scas_Contig705.28 N 0.705