Skud_Contig1473.3 (Saccharomyces kudriavzevii)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Skud_Contig1473.3 T05835_0.6 SGD (2003-Oct-3)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Skud_Contig1473.3 CCCH ZF 29 58
Skud_Contig1473.3 CCCH ZF 64 87
Skud_Contig1473.3 CCCH ZF 90 116
Skud_Contig1473.3 CCCH ZF 119 144
Skud_Contig1473.3 CCCH ZF 143 161

Links

Other CCCH ZF family RBPs
Other Saccharomyces kudriavzevii RBPs

12 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
22646_YPR107C Saccharomyces mikatae 22646_YPR107C N 0.984
25937_YPR107C Saccharomyces bayanus 25937_YPR107C N 0.984
YTH1 Saccharomyces cerevisiae YPR107C N 0.984
23053_YPR107C Saccharomyces paradoxus 23053_YPR107C N 0.984
SAKL0B09372g Lachancea kluyveri SAKL0B09372g N 0.794
Kwal_7234 Kluyveromyces waltii Kwal_7234 N 0.778
ZYRO0C17776g Zygosaccharomyces rouxii ZYRO0C17776g N 0.770
KLTH0D02948g Kluyveromyces thermotolerans KLTH0D02948g N 0.746
CAGL0G01694g Candida glabrata CAGL0G01694g N 0.730
YTH1 Ashbya gossypii YTH1 N 0.714
Scas_Contig705.28 Saccharomyces castellii Scas_Contig705.28 N 0.712
KLLA0F08129g Kluyveromyces lactis KLLA0F08129g N 0.707