B9GZ92_POPTR (Populus trichocarpa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 POPTR_0003s09240 T04018_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s09240.1 CCCH ZF 93 118
POPTR_0003s09240.1 CCCH ZF 165 191
POPTR_0003s09240.1 CCCH ZF 249 275

Links

Other CCCH ZF family RBPs
Other Populus trichocarpa RBPs

23 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30054.m000804 Ricinus communis 30054.m000804 N 0.988
AT1G32360 Arabidopsis thaliana AT1G32360-TAIR-G N 0.900
BGIOSIBCE026569 Oryza indica BGIOSIBCE026569 N 0.900
BRADI3G16360 Brachypodium distachyon BRADI3G16360 N 0.912
BRADI3G16377 Brachypodium distachyon BRADI3G16377 N 0.912
cassava25690.m1 Manihot esculenta cassava25690.m1 N 0.988
cassava5467.m1 Manihot esculenta cassava5467.m1 N 0.975
chr4.LjT10E08.110.nc Lotus japonicus chr4.LjT10E08.110.nc N 0.950
Cucsa.312990 Cucumis sativus Cucsa.312990 N 0.975
Glyma01g10610.1 Glycine max Glyma01g10610.1 N 0.963
GSVIVG00013136001 Vitis vinifera GSVIVG00013136001 N 0.950
gw1.11.272.1 Selaginella moellendorfii gw1.11.272.1 N 0.713
LOC_Os08g06330 Oryza sativa LOC_Os08g06330 N 0.900
MDP0000209929 Malus x domestica MDP0000209929 N 0.963
MDP0000706016 Malus x domestica MDP0000706016 N 0.975
Medtr8g078060 Medicago truncatula Medtr8g078060 N 0.938
mgf003951m Mimulus guttatus mgf003951m N 0.900
mgf004101m Mimulus guttatus mgf004101m N 0.900
mgf012162m Mimulus guttatus mgf012162m N 0.912
PK04103.1 Cannabis sativa PK04103.1 N 0.950
B9MU37_POPTR Populus trichocarpa POPTR_0001s02330 N 0.988
ppa008182m Prunus persica ppa008182m N 0.975
XM_002890939.1 Arabidopsis lyrata scaffold_103602.1 N 0.900