B9GZ92_POPTR (Populus trichocarpa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 POPTR_0003s09240 T04018_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s09240.1 CCCH ZF 93 118
POPTR_0003s09240.1 CCCH ZF 165 191
POPTR_0003s09240.1 CCCH ZF 249 275

Links

Other CCCH ZF family RBPs
Other Populus trichocarpa RBPs

23 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R001792 Ailuropoda melanoleuca Ame_R001792 N 0.000
PNPT1 Anolis carolinensis ENSACAG00000003692 N 0.000
PNPT1 Bos taurus ENSBTAG00000008909 N 0.000
PNPT1 Canis familiaris ENSCAFG00000002891 N 0.000
PNPT1 Choloepus hoffmanni ENSCHOG00000007360 N 0.000
PNPT1 Callithrix jacchus ENSCJAG00000009740 N 0.000
PNPT1 Cavia porcellus ENSCPOG00000011008 N 0.000
LOC100052355 Equus caballus ENSECAG00000020058 N 0.000
PNPT1 Echinops telfairi ENSETEG00000001582 N 0.000
PNPT1 Felis catus ENSFCAG00000013236 N 0.000
PNPT1 Homo sapiens ENSG00000138035 N 0.000
PNPT1 Gasterosteus aculeatus ENSGACG00000010840 N 0.000
PNPT1 Gallus gallus ENSGALG00000007935 N 0.000
PNPT1 Gorilla gorilla ENSGGOG00000006867 N 0.000
PNPT1 Meleagris gallopavo ENSMGAG00000001952 N 0.000
PNPT1 Myotis lucifugus ENSMLUG00000003886 N 0.000
PNPT1 Monodelphis domestica ENSMODG00000001984 N 0.000
Pnpt1 Mus musculus ENSMUSG00000020464 N 0.000
ENSOANG00000011178 Ornithorhynchus anatinus ENSOANG00000011178 N 0.000
PNPT1 Ochotona princeps ENSOPRG00000010232 N 0.000
PNPT1 Oryzias latipes ENSORLG00000004335 N 0.000
PNPT1 Procavia capensis ENSPCAG00000010806 N 0.000
ENSPPYG00000012399 Pongo pygmaeus ENSPPYG00000012399 N 0.000
PNPT1 Pan troglodytes ENSPTRG00000011934 N 0.000
Pnpt1 Rattus norvegicus ENSRNOG00000003600 N 0.000
PNPT1 Sus scrofa ENSSSCG00000008399 N 0.000
PNPT1 Spermophilus tridecemlineatus ENSSTOG00000006304 N 0.000
PNPT1 Taeniopygia guttata ENSTGUG00000006908 N 0.000
PNPT1 Tetraodon nigroviridis ENSTNIG00000007460 N 0.000
PNPT1 Takifugu rubripes ENSTRUG00000005495 N 0.000
PNPT1 Tursiops truncatus ENSTTRG00000000029 N 0.000
PNPT1 Vicugna pacos ENSVPAG00000007097 N 0.000
pnpt1 Xenopus tropicalis ENSXETG00000006075 N 0.000
XP_001192933.1 Strongylocentrotus purpuratus XP_001192933.1 N 0.000
XP_788673.2 Strongylocentrotus purpuratus XP_788673.2 N 0.000