LOC_Os08g06330 (Oryza sativa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 LOC_Os08g06330 T03966_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os08g06330.1 CCCH ZF 88 113
LOC_Os08g06330.1 CCCH ZF 170 196
LOC_Os08g06330.1 CCCH ZF 246 272

Links

Other CCCH ZF family RBPs
Other Oryza sativa RBPs

24 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE026569 Oryza indica BGIOSIBCE026569 N 1.000
BRADI3G16377 Brachypodium distachyon BRADI3G16377 N 0.988
BRADI3G16360 Brachypodium distachyon BRADI3G16360 N 0.988
chr4.LjT10E08.110.nc Lotus japonicus chr4.LjT10E08.110.nc N 0.938
GSVIVG00013136001 Vitis vinifera GSVIVG00013136001 N 0.938
MDP0000706016 Malus x domestica MDP0000706016 N 0.925
ppa008182m Prunus persica ppa008182m N 0.925
Glyma01g10610.1 Glycine max Glyma01g10610.1 N 0.925
MDP0000209929 Malus x domestica MDP0000209929 N 0.912
Medtr8g078060 Medicago truncatula Medtr8g078060 N 0.912
B9MU37_POPTR Populus trichocarpa POPTR_0001s02330 N 0.912
30054.m000804 Ricinus communis 30054.m000804 N 0.912
Cucsa.312990 Cucumis sativus Cucsa.312990 N 0.912
cassava25690.m1 Manihot esculenta cassava25690.m1 N 0.912
PK04103.1 Cannabis sativa PK04103.1 N 0.900
cassava5467.m1 Manihot esculenta cassava5467.m1 N 0.900
B9GZ92_POPTR Populus trichocarpa POPTR_0003s09240 N 0.900
AT1G32360 Arabidopsis thaliana AT1G32360-TAIR-G N 0.887
mgf004101m Mimulus guttatus mgf004101m N 0.887
mgf012162m Mimulus guttatus mgf012162m N 0.887
mgf003951m Mimulus guttatus mgf003951m N 0.887
XM_002890939.1 Arabidopsis lyrata scaffold_103602.1 N 0.887
gw1.11.272.1 Selaginella moellendorfii gw1.11.272.1 N 0.713
estExt_fgenesh1_pg.C_430142 Physcomitrella patens estExt_fgenesh1_pg.C_430142 N 0.700