Cucsa.312990 (Cucumis sativus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Cucsa.312990 T04847_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.312990.1 CCCH ZF 88 113
Cucsa.312990.1 CCCH ZF 163 189
Cucsa.312990.1 CCCH ZF 232 258
Cucsa.312990.2 CCCH ZF 88 113
Cucsa.312990.2 CCCH ZF 162 188
Cucsa.312990.2 CCCH ZF 231 257
Cucsa.312990.3 CCCH ZF 88 113
Cucsa.312990.3 CCCH ZF 162 188
Cucsa.312990.3 CCCH ZF 231 257

Links

Other CCCH ZF family RBPs
Other Cucumis sativus RBPs

24 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30054.m000804 Ricinus communis 30054.m000804 N 0.988
cassava25690.m1 Manihot esculenta cassava25690.m1 N 0.988
Glyma01g10610.1 Glycine max Glyma01g10610.1 N 0.988
chr4.LjT10E08.110.nc Lotus japonicus chr4.LjT10E08.110.nc N 0.975
B9GZ92_POPTR Populus trichocarpa POPTR_0003s09240 N 0.975
cassava5467.m1 Manihot esculenta cassava5467.m1 N 0.975
B9MU37_POPTR Populus trichocarpa POPTR_0001s02330 N 0.963
PK04103.1 Cannabis sativa PK04103.1 N 0.963
Medtr8g078060 Medicago truncatula Medtr8g078060 N 0.963
ppa008182m Prunus persica ppa008182m N 0.950
MDP0000706016 Malus x domestica MDP0000706016 N 0.950
mgf012162m Mimulus guttatus mgf012162m N 0.938
GSVIVG00013136001 Vitis vinifera GSVIVG00013136001 N 0.938
MDP0000209929 Malus x domestica MDP0000209929 N 0.938
XM_002890939.1 Arabidopsis lyrata scaffold_103602.1 N 0.925
mgf003951m Mimulus guttatus mgf003951m N 0.925
mgf004101m Mimulus guttatus mgf004101m N 0.925
AT1G32360 Arabidopsis thaliana AT1G32360-TAIR-G N 0.925
BRADI3G16377 Brachypodium distachyon BRADI3G16377 N 0.925
BRADI3G16360 Brachypodium distachyon BRADI3G16360 N 0.925
BGIOSIBCE026569 Oryza indica BGIOSIBCE026569 N 0.912
LOC_Os08g06330 Oryza sativa LOC_Os08g06330 N 0.912
gw1.11.272.1 Selaginella moellendorfii gw1.11.272.1 N 0.713