CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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64152
(
Helobdella robusta
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
64152
T04706_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
64152
CCCH ZF
2
28
YKTELCRPYEENGSCKYGDKCQFAHGK
64152
CCCH ZF
40
66
YKTDLCKTYHTTGLCPYGPRCHFIHND
Links
Other
CCCH ZF
family RBPs
Other
Helobdella robusta
RBPs
115 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL002272
Aedes aegypti
AAEL002272
N
0.000
amel4_ncbi_hmm4222
Apis mellifera
amel4_ncbi_hmm4222
I
0.000
BGIBMGA011690
Bombyx mori
BGIBMGA011690
N
0.000
CPIJ007352
Culex quinquefasciatus
CPIJ007352
N
0.000
CpipJ_CPIJ007352
Culex pipiens
CpipJ_CPIJ007352
N
0.000
ENSPPYG00000005933
Pongo pygmaeus
ENSPPYG00000005933
I
0.833
ZFP36L1
Tursiops truncatus
ENSTTRG00000003475
I
0.833
nasonia_NCBI_hmm460384
Nasonia vitripennis
nasonia_NCBI_hmm460384
I
0.000
PHUM305930
Pediculus humanus
PHUM305930
I
0.000