amel4_ncbi_hmm4222 (Apis mellifera)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 amel4_ncbi_hmm4222 T61916_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YTHDC1
M354_0.6 		Homo sapiens KVVURC SELEX
Cook et al.(2011)
969_20167602 		0.711
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
amel4_ncbi_hmm4222 YTH 246 342

Links

Other YTH family RBPs
Other Apis mellifera RBPs

52 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
nasonia_NCBI_hmm460384 Nasonia vitripennis nasonia_NCBI_hmm460384 I 0.969
PHUM305930 Pediculus humanus PHUM305930 I 0.876
BGIBMGA011690 Bombyx mori BGIBMGA011690 N 0.856
CPIJ007352 Culex quinquefasciatus CPIJ007352 N 0.784
CpipJ_CPIJ007352 Culex pipiens CpipJ_CPIJ007352 N 0.784
AAEL002272 Aedes aegypti AAEL002272 N 0.784
AGAP005940 Anopheles gambiae AGAP005940 N 0.773
XP_001181366.1 Strongylocentrotus purpuratus XP_001181366.1 I 0.742
XP_783255.2 Strongylocentrotus purpuratus XP_783255.2 I 0.742
GH24419 Drosophila grimshawi FBgn0131875 N 0.732
GI12962 Drosophila mojavensis FBgn0135719 N 0.732
GH15361 Drosophila grimshawi FBgn0122833 N 0.732
YT521-B Drosophila melanogaster FBgn0027616 N 0.732
GM14053 Drosophila sechellia FBgn0168982 N 0.732
GF10271 Drosophila ananassae FBgn0087312 N 0.732
GG14260 Drosophila erecta FBgn0106521 N 0.732
GE20687 Drosophila yakuba FBgn0237992 N 0.732
PASA_GEN_12100033 Daphnia pulex PASA_GEN_12100033 N 0.732
ythdc1 Danio rerio ENSDARG00000051953 I 0.732
GD13329 Drosophila simulans FBgn0185047 N 0.732
GA28277-RA Drosophila pseudoobscura FBgn0249640 N 0.732
GJ13107 Drosophila virilis FBgn0200334 N 0.732
GK20378 Drosophila willistoni FBgn0222375 N 0.732
YTHDC1 Taeniopygia guttata ENSTGUG00000004452 I 0.711
e_gw.768.2.1 Branchiostoma floridae e_gw.768.2.1 N 0.711
YTHDC1 Vicugna pacos ENSVPAG00000009040 I 0.711
YTHDC1 Tupaia belangeri ENSTBEG00000011546 I 0.711
YTHDC1 Pteropus vampyrus ENSPVAG00000015551 I 0.711
YTHDC1 Homo sapiens ENSG00000083896 D 0.711
Q5F341_CHICK Gallus gallus ENSGALG00000011795 I 0.711
YTHDC1 Gorilla gorilla ENSGGOG00000021958 I 0.711
YTHDC1 Sorex araneus ENSSARG00000010960 I 0.711
YTHDC1 Erinaceus europaeus ENSEEUG00000015466 I 0.711
Ythdc1 Dipodomys ordii ENSDORG00000013045 I 0.711
Q29RQ7_BOVIN Bos taurus ENSBTAG00000015572 I 0.711
YTHDC1 Callithrix jacchus ENSCJAG00000009934 I 0.711
YTHDC1 Cavia porcellus ENSCPOG00000010929 I 0.711
YTHDC1 Macaca mulatta ENSMMUG00000002265 I 0.711
YTHDC1 Meleagris gallopavo ENSMGAG00000010391 I 0.711
Ythdc1 Mus musculus ENSMUSG00000035851 I 0.711
ENSPPYG00000014726 Pongo pygmaeus ENSPPYG00000014726 I 0.711
YTHDC1 Ochotona princeps ENSOPRG00000008986 I 0.711
YTHDC1 Pan troglodytes ENSPTRG00000016105 I 0.711
Ythdc1 Rattus norvegicus ENSRNOG00000001996 I 0.711
YTHDC1 Canis familiaris ENSCAFG00000002821 I 0.701
ythdc1 Xenopus tropicalis ENSXETG00000017960 I 0.701
Ame_R018249 Ailuropoda melanoleuca Ame_R018249 I 0.701
LOC100066303 Equus caballus ENSECAG00000018303 I 0.701
YTHDC1 Loxodonta africana ENSLAFG00000021592 I 0.701
YTHDC1 Ornithorhynchus anatinus ENSOANG00000014398 I 0.701
YTHDC1 Oryctolagus cuniculus ENSOCUG00000015886 I 0.701
YTHDC1 Otolemur garnettii ENSOGAG00000003362 I 0.701