estExt_Genewise1Plus.C_sca_12_chr5_2_00446 (Nectria haematococca)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 estExt_Genewise1Plus.C_sca_12_chr5_2_00446 T05151_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1Plus.C_sca_12_chr5_2_00446 CCCH ZF 95 120

Links

Other CCCH ZF family RBPs
Other Nectria haematococca RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29955.m001158 Ricinus communis 29955.m001158 N 0.000
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.000
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.000
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.000
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.000
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.000
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.000
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.000
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.000
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.000
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.000
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.000
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.000
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.000
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.000
MDP0000171737 Malus x domestica MDP0000171737 N 0.000
MDP0000231231 Malus x domestica MDP0000231231 N 0.000
MDP0000286471 Malus x domestica MDP0000286471 N 0.000
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.000
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.000
PK23104.1 Cannabis sativa PK23104.1 N 0.000
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.000
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.000
ppa003664m Prunus persica ppa003664m N 0.000
SB03G031190 Sorghum bicolor Sb03g031190 N 0.000