CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1Plus.C_sca_12_chr5_2_00446
(
Nectria haematococca
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
estExt_Genewise1Plus.C_sca_12_chr5_2_00446
T05151_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1Plus.C_sca_12_chr5_2_00446
CCCH ZF
95
120
PKTVVCIFYKKGNCEKGRKCKFAHDL
Links
Other
CCCH ZF
family RBPs
Other
Nectria haematococca
RBPs
48 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29955.m001158
Ricinus communis
29955.m001158
N
0.000
ECT8
Arabidopsis thaliana
AT1G79270-TAIR-G
N
0.000
BGIOSIBCE003171
Oryza indica
BGIOSIBCE003171
N
0.000
BRADI2G46590
Brachypodium distachyon
BRADI2G46590
N
0.000
cassava17772.valid.m1
Manihot esculenta
cassava17772.valid.m1
N
0.000
XM_002887730.1
Arabidopsis lyrata
fgenesh2_kg.2__2224__AT1G79270.1
N
0.000
Glyma08g17240.1
Glycine max
Glyma08g17240.1
N
0.000
Glyma15g41960.1
Glycine max
Glyma15g41960.1
N
0.000
Glyma17g04270.1
Glycine max
Glyma17g04270.1
N
0.000
GRMZM2G127780
Zea mays
GRMZM2G127780
N
0.000
GRMZM2G169116
Zea mays
GRMZM2G169116
N
0.000
GSVIVG00017649001
Vitis vinifera
GSVIVG00017649001
N
0.000
GSVIVG00036696001
Vitis vinifera
GSVIVG00036696001
N
0.000
LjSGA_032005.1
Lotus japonicus
LjSGA_032005.1
N
0.000
LOC_Os01g48790
Oryza sativa
LOC_Os01g48790
N
0.000
MDP0000171737
Malus x domestica
MDP0000171737
N
0.000
MDP0000231231
Malus x domestica
MDP0000231231
N
0.000
MDP0000286471
Malus x domestica
MDP0000286471
N
0.000
Medtr2g085380
Medicago truncatula
Medtr2g085380
N
0.000
PDK_20s1631851g001
Phoenix dactylifera
PDK_20s1631851g001
N
0.000
PK23104.1
Cannabis sativa
PK23104.1
N
0.000
B9HI18_POPTR
Populus trichocarpa
POPTR_0008s08030
N
0.000
B9HYD4_POPTR
Populus trichocarpa
POPTR_0010s18300
N
0.000
ppa003664m
Prunus persica
ppa003664m
N
0.000
SB03G031190
Sorghum bicolor
Sb03g031190
N
0.000