CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Bm1_13920
(
Brugia malayi
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
Bm1_13920
T01237_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bm1_13920
CCCH ZF
90
115
PKSVVCLFYKQGMCHKGEKCKFSHDL
Links
Other
CCCH ZF
family RBPs
Other
Brugia malayi
RBPs
104 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
WUBG_13399
Wuchereria bancrofti
WUBG_13399
N
1.000
LOAG_00784
Loa loa
LOAG_00784
N
0.962
ZC3H15
Anolis carolinensis
ENSACAG00000001916
N
0.846
Aqu1.222312
Amphimedon queenslandica
Aqu1.222312
N
0.846
zc3h15
Xenopus tropicalis
ENSXETG00000013336
N
0.846
ENSPPYG00000013004
Pongo pygmaeus
ENSPPYG00000013004
N
0.808
ZC3H15
Pan troglodytes
ENSPTRG00000012717
N
0.808
ZC3H15
Sorex araneus
ENSSARG00000012071
N
0.808
ZC3H15
Sus scrofa
ENSSSCG00000016026
N
0.808
ZC3H15
Procavia capensis
ENSPCAG00000008499
N
0.808
Zc3h15
Rattus norvegicus
ENSRNOG00000005256
N
0.808
ZC3H15
Otolemur garnettii
ENSOGAG00000002182
N
0.808
ITGAV
Monodelphis domestica
ENSMODG00000010653
N
0.808
ZC3H15
Macaca mulatta
ENSMMUG00000017248
N
0.808
ZC3H15
Myotis lucifugus
ENSMLUG00000007741
N
0.808
Zc3h15
Mus musculus
ENSMUSG00000027091
N
0.808
ZC3H15
Ornithorhynchus anatinus
ENSOANG00000015742
N
0.808
ZC3H15
Spermophilus tridecemlineatus
ENSSTOG00000006873
N
0.808
ENSOCUG00000011903
Oryctolagus cuniculus
ENSOCUG00000011903
N
0.808
ENSOPRG00000015790
Ochotona princeps
ENSOPRG00000015790
N
0.808
ZC3H15
Tetraodon nigroviridis
ENSTNIG00000009860
N
0.808
Minc08580
Meloidogyne incognita
Minc08580
N
0.808
Ame_R017931
Ailuropoda melanoleuca
Ame_R017931
N
0.808
PMAA_036360
Penicillium marneffei
PMAA_036360
N
0.808
AAH77826
Xenopus laevis
AAH77826
N
0.808
Q6DD06
Xenopus laevis
Q6DD06
N
0.808
BAD89267
Xenopus laevis
BAD89267
N
0.808
estExt_gwp.C_6160004
Branchiostoma floridae
estExt_gwp.C_6160004
N
0.808
GK21573
Drosophila willistoni
FBgn0223565
N
0.808
ZC3H15
Microcebus murinus
ENSMICG00000014245
N
0.808
ZC3H15
Taeniopygia guttata
ENSTGUG00000011131
N
0.808
ZC3H15
Tarsius syrichta
ENSTSYG00000011019
N
0.808
ZC3H15
Tursiops truncatus
ENSTTRG00000012425
N
0.808
GD10149
Drosophila simulans
FBgn0181924
N
0.808
ZC3H15
Vicugna pacos
ENSVPAG00000006980
N
0.808
ZC3H15
Tupaia belangeri
ENSTBEG00000015530
N
0.808
ZC3H15
Pteropus vampyrus
ENSPVAG00000004828
N
0.808
nasonia_NCBI_hmm1144383
Nasonia vitripennis
nasonia_NCBI_hmm1144383
N
0.808
ZC3H15
Meleagris gallopavo
ENSMGAG00000004447
N
0.808
amel4_ncbi_hmm11607
Apis mellifera
amel4_ncbi_hmm11607
N
0.808
ENSCPOG00000012965
Cavia porcellus
ENSCPOG00000012965
N
0.808
ZC3H15
Callithrix jacchus
ENSCJAG00000005931
N
0.808
ZC3HF_BOVIN
Bos taurus
ENSBTAG00000021762
N
0.808
ZC3H15
Canis familiaris
ENSCAFG00000014494
N
0.808
ZC3H15
Choloepus hoffmanni
ENSCHOG00000011958
N
0.808
LOC100068634
Equus caballus
ENSECAG00000017149
N
0.808
Zc3h15
Dipodomys ordii
ENSDORG00000011664
N
0.808
ZC3H15
Homo sapiens
ENSG00000065548
N
0.808
ZC3H15
Gorilla gorilla
ENSGGOG00000000073
N
0.808
ZC3HF_CHICK
Gallus gallus
ENSGALG00000002670
N
0.808
ZC3H15
Felis catus
ENSFCAG00000008213
N
0.808
ENSLAFG00000001563
Loxodonta africana
ENSLAFG00000001563
N
0.808
ENSETEG00000015556
Echinops telfairi
ENSETEG00000015556
N
0.808
DGIL_AUG5s16g7t1
Acyrtosiphon pisum
DGIL_AUG5s16g7t1
N
0.769
XP_002158150.1
Hydra magnipapillata
XP_002158150.1
N
0.769
NFIA_073040
Neosartorya fischeri
CADNFIAG00007899
N
0.769
PHUM521160
Pediculus humanus
PHUM521160
N
0.769
BGIBMGA011604
Bombyx mori
BGIBMGA011604
N
0.769
AFUA_5G13930
Aspergillus fumigatus
CADAFUAG00006431
N
0.769
ANIA_06922
Aspergillus nidulans
CADANIAG00007728
N
0.769
ENSCING00000006888
Ciona intestinalis
ENSCING00000006888
N
0.769
RGD1564243
Rattus norvegicus
ENSRNOG00000015276
N
0.769
ZC3H15
Takifugu rubripes
ENSTRUG00000004988
N
0.769
zc3h15
Danio rerio
ENSDARG00000015889
N
0.769
ZC3H15
Dasypus novemcinctus
ENSDNOG00000018840
N
0.769
ZC3H15
Oryzias latipes
ENSORLG00000018606
N
0.769
ZC3H15
Gasterosteus aculeatus
ENSGACG00000011648
N
0.769
ENSOCUG00000011909
Oryctolagus cuniculus
ENSOCUG00000011909
N
0.769
Glyma13g19900.1
Glycine max
Glyma13g19900.1
N
0.731
estExt_Genewise1.C_210247
Trichoderma reesei
estExt_Genewise1.C_210247
N
0.731
estExt_Genewise1Plus.C_sca_12_chr5_2_00446
Nectria haematococca
estExt_Genewise1Plus.C_sca_12_chr5_2_00446
N
0.731
estExt_Genewise1Plus.C_sca_2280007
Lottia gigantea
estExt_Genewise1Plus.C_sca_2280007
N
0.731
gw1.23.236.1
Trichoderma virens
gw1.23.236.1
N
0.731
An14g05330
Aspergillus niger
CADANGAG00011470
N
0.731
fgeneshTA2_pg.C_scaffold_15000146
Trichoplax adhaerens
fgeneshTA2_pg.C_scaffold_15000146
N
0.731
SS1G_13466
Sclerotinia sclerotiorum
SS1G_13466
N
0.731
estExt_Genewise1.C_110154
Neurospora discreta
estExt_Genewise1.C_110154
N
0.731
BC1G_06447
Botrytis cinerea
BC1G_06447
N
0.731
ZYRO0C15598g
Zygosaccharomyces rouxii
ZYRO0C15598g
N
0.731
ppa007903m
Prunus persica
ppa007903m
N
0.731
fgenesh1_pg.00710_#_148
Aspergillus carbonarius
fgenesh1_pg.00710_#_148
N
0.731
BGIOSIBCE004176
Oryza indica
BGIOSIBCE004176
N
0.731
gw1.233.15.1
Physcomitrella patens
gw1.233.15.1
N
0.731
NCU01795
Neurospora crassa
NCU01795
N
0.731
CBG00292
Caenorhabditis briggsae
CBG00292
N
0.731
F27D4.4
Caenorhabditis elegans
F27D4.4
N
0.731
ATEG_06133
Aspergillus terreus
CADATEAG00002525
N
0.731
GSVIVG00016357001
Vitis vinifera
GSVIVG00016357001
N
0.731
CBN03898
Caenorhabditis brenneri
CBN03898
N
0.731
CBN11546
Caenorhabditis brenneri
CBN11546
N
0.731
CPAG_03559
Candida parapsilosis
CPAG_03559
N
0.731
CRE20408
Caenorhabditis remanei
CRE20408
N
0.731
CJA17052
Caenorhabditis japonica
CJA17052
N
0.731
LOC_Os01g61830
Oryza sativa
LOC_Os01g61830
N
0.731
SB03G039020
Sorghum bicolor
Sb03g039020
N
0.731
estExt_fgenesh1_pg.C_40101
Trichoderma atroviride
estExt_fgenesh1_pg.C_40101
N
0.731
estExt_fgenesh1_pg.C_70448
Myceliophthora thermophila
estExt_fgenesh1_pg.C_70448
N
0.731
estExt_fgenesh1_pm.C_130118
Neurospora tetrasperma
estExt_fgenesh1_pm.C_130118
N
0.731
e_gw.53.202.1
Nematostella vectensis
e_gw.53.202.1
N
0.731
cassava3130.m1
Manihot esculenta
cassava3130.m1
N
0.731
72073
Helobdella robusta
72073
N
0.731
cassava28857.valid.m1
Manihot esculenta
cassava28857.valid.m1
N
0.731
cassava28858.valid.m1
Manihot esculenta
cassava28858.valid.m1
N
0.731
estExt_fgenesh2_kg.C_60126
Thielavia terrestris
estExt_fgenesh2_kg.C_60126
N
0.731