fgenesh2_pg.scaffold_93000116 (Branchiostoma floridae)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 fgenesh2_pg.scaffold_93000116 T05322_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_93000116 CCCH ZF 77 103
fgenesh2_pg.scaffold_93000116 CCCH ZF 115 137

Links

Other CCCH ZF family RBPs
Other Branchiostoma floridae RBPs

12 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29629.m001425 Ricinus communis 29629.m001425 N 0.000
29917.m002004 Ricinus communis 29917.m002004 N 0.000
cassava24310.valid.m1 Manihot esculenta cassava24310.valid.m1 N 0.000
cassava7031.valid.m1 Manihot esculenta cassava7031.valid.m1 N 0.000
cassava897.valid.m1 Manihot esculenta cassava897.valid.m1 N 0.000
chr2.LjT32G18.130.nc Lotus japonicus chr2.LjT32G18.130.nc N 0.000
Cucsa.240780 Cucumis sativus Cucsa.240780 N 0.000
Cucsa.340040 Cucumis sativus Cucsa.340040 N 0.000
XM_002870653.1 Arabidopsis lyrata fgenesh2_kg.7__3369__AT5G40490.1 N 0.000
Glyma05g09040.1 Glycine max Glyma05g09040.1 N 0.000
Glyma16g07660.1 Glycine max Glyma16g07660.1 N 0.000
Glyma19g00530.1 Glycine max Glyma19g00530.1 N 0.000
Glyma19g10300.1 Glycine max Glyma19g10300.1 N 0.000
GSVIVG00012784001 Vitis vinifera GSVIVG00012784001 N 0.000
GSVIVG00032402001 Vitis vinifera GSVIVG00032402001 N 0.000
MDP0000202850 Malus x domestica MDP0000202850 N 0.000
MDP0000270712 Malus x domestica MDP0000270712 N 0.000
MDP0000303054 Malus x domestica MDP0000303054 N 0.000
mgf016066m Mimulus guttatus mgf016066m N 0.000
PK13311.1 Cannabis sativa PK13311.1 N 0.000
B9GI65_POPTR Populus trichocarpa POPTR_0001s35360 N 0.000
B9GFZ7_POPTR Populus trichocarpa POPTR_0001s37920 N 0.000
ppa006963m Prunus persica ppa006963m N 0.000
ppa007179m Prunus persica ppa007179m N 0.000