LIN28A (Ochotona princeps)
CCHC ZF,CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00313 (CSD) 		IPR001878
IPR002059 		ENSOPRG00000001591 T06817_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
LIN28A
M153_0.6 		Homo sapiens YGGAGGR RNAcompete
Ray et al.(2013)
RNCMPT00162 		1.000
LIN28A
M035_0.6 		Homo sapiens HGGAGWA RNAcompete
Ray et al.(2013)
RNCMPT00036 		1.000
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000001452 CSD 40 112
ENSOPRP00000001452 CCHC ZF 137 154
ENSOPRP00000001452 CCHC ZF 159 176

Links

Other CCHC ZF,CSD family RBPs
Other Ochotona princeps RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH72959 Xenopus laevis AAH72959 I 0.000
AAH74252 Xenopus laevis AAH74252 I 0.000
Ame_R017219 Ailuropoda melanoleuca Ame_R017219 I 0.000
NOVA1 Anolis carolinensis ENSACAG00000000477 I 0.000
NOVA2 Anolis carolinensis ENSACAG00000003724 I 0.000
NOVA2 Bos taurus ENSBTAG00000013157 I 0.000
NOVA2 Canis familiaris ENSCAFG00000004359 I 0.000
NOVA1 Canis familiaris ENSCAFG00000012492 I 0.000
NOVA1 Choloepus hoffmanni ENSCHOG00000006617 I 0.000
LOC100389932 Callithrix jacchus ENSCJAG00000006217 I 0.000
LOC100402824 Callithrix jacchus ENSCJAG00000012121 I 0.000
NOVA1 Cavia porcellus ENSCPOG00000002579 I 0.000
nova2 Danio rerio ENSDARG00000017673 I 0.000
nova1 Danio rerio ENSDARG00000020178 I 0.000
Nova1 Dipodomys ordii ENSDORG00000012633 I 0.000
NOVA1 Erinaceus europaeus ENSEEUG00000013658 I 0.000
NOVA1 Echinops telfairi ENSETEG00000002159 I 0.000
NOVA1 Felis catus ENSFCAG00000004226 I 0.000
NOVA2 Felis catus ENSFCAG00000009509 I 0.000
NOVA2 Homo sapiens ENSG00000104967 D 0.000
NOVA1 Homo sapiens ENSG00000139910 D 0.000
ENSG00000248163 Homo sapiens ENSG00000248163 I 0.000
ENSG00000249644 Homo sapiens ENSG00000249644 I 0.000
NOVA1 Gasterosteus aculeatus ENSGACG00000012628 I 0.000
NOVA1 Gasterosteus aculeatus ENSGACG00000020175 I 0.000
NOVA1 Gorilla gorilla ENSGGOG00000016495 I 0.000
NOVA1 Loxodonta africana ENSLAFG00000006455 I 0.000
NOVA2 Loxodonta africana ENSLAFG00000025917 I 0.000
NOVA1 Meleagris gallopavo ENSMGAG00000012359 I 0.000
NOVA2 Myotis lucifugus ENSMLUG00000008039 I 0.000
LOC722459 Macaca mulatta ENSMMUG00000004271 I 0.000
NOVA1 Monodelphis domestica ENSMODG00000001830 I 0.000
Nova1 Mus musculus ENSMUSG00000021047 I 0.000
Nova2 Mus musculus ENSMUSG00000030411 D 0.000
NOVA1 Oryctolagus cuniculus ENSOCUG00000017622 I 0.000
NOVA2 Oryctolagus cuniculus ENSOCUG00000022891 I 0.000
NOVA1 Oryzias latipes ENSORLG00000000350 I 0.000
ENSPPYG00000005714 Pongo pygmaeus ENSPPYG00000005714 I 0.000
NOVA1 Pan troglodytes ENSPTRG00000006229 I 0.000
NOVA2 Pan troglodytes ENSPTRG00000011173 I 0.000
NOVA1 Pteropus vampyrus ENSPVAG00000002564 I 0.000
NOVA2 Pteropus vampyrus ENSPVAG00000006169 I 0.000
Nova2 Rattus norvegicus ENSRNOG00000013847 I 0.000
Nova1 Rattus norvegicus ENSRNOG00000031440 I 0.000
NOVA1 Sorex araneus ENSSARG00000002599 I 0.000
NOVA2 Sus scrofa ENSSSCG00000003095 I 0.000
NOVA1 Tupaia belangeri ENSTBEG00000009774 I 0.000
NOVA1 Taeniopygia guttata ENSTGUG00000011799 I 0.000
NOVA1 Tetraodon nigroviridis ENSTNIG00000011634 I 0.000
NOVA1 Takifugu rubripes ENSTRUG00000006617 I 0.000
NOVA1 Takifugu rubripes ENSTRUG00000016275 I 0.000
nova1 Xenopus tropicalis ENSXETG00000010244 I 0.000
nova2 Xenopus tropicalis ENSXETG00000019101 I 0.000
estExt_GenewiseH_1.C_6000020 Branchiostoma floridae estExt_GenewiseH_1.C_6000020 I 0.000
XP_001175575.1 Strongylocentrotus purpuratus XP_001175575.1 N 0.000
XP_001175715.1 Strongylocentrotus purpuratus XP_001175715.1 N 0.000
XP_001176230.1 Strongylocentrotus purpuratus XP_001176230.1 N 0.000
XP_790705.1 Strongylocentrotus purpuratus XP_790705.1 N 0.000