nova1 (Danio rerio)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSDARG00000020178 T18618_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NOVA2
M325_0.6 		Homo sapiens UCAY SELEX
Cook et al.(2011)
682_10811881 		0.944
NOVA2
M323_0.6 		Homo sapiens GGGRGAGUCAUHSCY SELEX
Cook et al.(2011)
680_9789075 		0.944
Nova2
M326_0.6 		Mus musculus Sequence logo not available YCAY CLIP-seq
Cook et al.(2011)
685_18978773 		0.939
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000088454 KH 58 123
ENSDARP00000088454 KH 156 220
ENSDARP00000088454 KH 411 476

Links

Other KH family RBPs
Other Danio rerio RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NOVA1 Gasterosteus aculeatus ENSGACG00000020175 I 0.995
NOVA1 Takifugu rubripes ENSTRUG00000006617 I 0.990
NOVA1 Oryzias latipes ENSORLG00000000350 I 0.990
NOVA1 Takifugu rubripes ENSTRUG00000016275 I 0.990
NOVA1 Tetraodon nigroviridis ENSTNIG00000011634 I 0.990
nova1 Xenopus tropicalis ENSXETG00000010244 I 0.949
AAH74252 Xenopus laevis AAH74252 I 0.949
ENSG00000249644 Homo sapiens ENSG00000249644 I 0.949
NOVA1 Homo sapiens ENSG00000139910 D 0.949
ENSG00000248163 Homo sapiens ENSG00000248163 I 0.949
NOVA1 Pan troglodytes ENSPTRG00000006229 I 0.944
NOVA1 Taeniopygia guttata ENSTGUG00000011799 I 0.944
NOVA2 Pan troglodytes ENSPTRG00000011173 I 0.944
ENSPPYG00000005714 Pongo pygmaeus ENSPPYG00000005714 I 0.944
NOVA1 Vicugna pacos ENSVPAG00000007807 I 0.944
NOVA1 Sorex araneus ENSSARG00000002599 I 0.944
NOVA2 Oryctolagus cuniculus ENSOCUG00000022891 I 0.944
NOVA1 Tupaia belangeri ENSTBEG00000009774 I 0.944
NOVA2 Sus scrofa ENSSSCG00000003095 I 0.944
Nova1 Dipodomys ordii ENSDORG00000012633 I 0.944
NOVA1 Monodelphis domestica ENSMODG00000001830 I 0.944
NOVA2 Homo sapiens ENSG00000104967 D 0.944
NOVA2 Canis familiaris ENSCAFG00000004359 I 0.944
NOVA2 Felis catus ENSFCAG00000009509 I 0.944
NOVA1 Canis familiaris ENSCAFG00000012492 I 0.944
NOVA1 Cavia porcellus ENSCPOG00000002579 I 0.944
LOC100389932 Callithrix jacchus ENSCJAG00000006217 I 0.944
NOVA1 Gorilla gorilla ENSGGOG00000016495 I 0.944
NOVA1 Loxodonta africana ENSLAFG00000006455 I 0.944
LOC722459 Macaca mulatta ENSMMUG00000004271 I 0.944
NOVA1 Anolis carolinensis ENSACAG00000000477 I 0.944
NOVA1 Oryctolagus cuniculus ENSOCUG00000017622 I 0.944
NOVA2 Bos taurus ENSBTAG00000013157 I 0.944
Ame_R017219 Ailuropoda melanoleuca Ame_R017219 I 0.944
NOVA2 Anolis carolinensis ENSACAG00000003724 I 0.939
NOVA1 Pteropus vampyrus ENSPVAG00000002564 I 0.939
Nova1 Mus musculus ENSMUSG00000021047 I 0.939
Nova1 Rattus norvegicus ENSRNOG00000031440 I 0.939
Nova2 Rattus norvegicus ENSRNOG00000013847 I 0.939
Nova2 Mus musculus ENSMUSG00000030411 D 0.939
NOVA1 Gasterosteus aculeatus ENSGACG00000012628 I 0.934
LOC100402824 Callithrix jacchus ENSCJAG00000012121 I 0.934
NOVA2 Loxodonta africana ENSLAFG00000025917 I 0.934
NOVA2 Myotis lucifugus ENSMLUG00000008039 I 0.934
nova2 Danio rerio ENSDARG00000017673 I 0.924
NOVA1 Choloepus hoffmanni ENSCHOG00000006617 I 0.914
NOVA1 Felis catus ENSFCAG00000004226 I 0.878
NOVA2 Pteropus vampyrus ENSPVAG00000006169 I 0.873
NOVA1 Meleagris gallopavo ENSMGAG00000012359 I 0.853
NOVA1 Erinaceus europaeus ENSEEUG00000013658 I 0.843
AAH72959 Xenopus laevis AAH72959 I 0.838
nova2 Xenopus tropicalis ENSXETG00000019101 I 0.832
estExt_GenewiseH_1.C_6000020 Branchiostoma floridae estExt_GenewiseH_1.C_6000020 I 0.773
NOVA1 Echinops telfairi ENSETEG00000002159 I 0.766