NOVA1 (Takifugu rubripes)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSTRUG00000016275 T19661_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NOVA2
M325_0.6 		Homo sapiens UCAY SELEX
Cook et al.(2011)
682_10811881 		0.934
NOVA2
M323_0.6 		Homo sapiens GGGRGAGUCAUHSCY SELEX
Cook et al.(2011)
680_9789075 		0.934
Nova2
M326_0.6 		Mus musculus Sequence logo not available YCAY CLIP-seq
Cook et al.(2011)
685_18978773 		0.929
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000041611 KH 58 123
ENSTRUP00000041611 KH 183 247
ENSTRUP00000041611 KH 439 504
ENSTRUP00000041612 KH 58 123
ENSTRUP00000041612 KH 156 220
ENSTRUP00000041612 KH 412 477
ENSTRUP00000041613 KH 64 129
ENSTRUP00000041613 KH 162 226
ENSTRUP00000041613 KH 418 473
ENSTRUP00000041614 KH 4 68
ENSTRUP00000041614 KH 207 272

Links

Other KH family RBPs
Other Takifugu rubripes RBPs

70 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NOVA1 Tetraodon nigroviridis ENSTNIG00000018993 N 1.000
NOVA1 Gasterosteus aculeatus ENSGACG00000020175 I 0.995
NOVA1 Gasterosteus aculeatus ENSGACG00000012628 I 0.995
NOVA1 Oryzias latipes ENSORLG00000000350 I 0.990
NOVA1 Tetraodon nigroviridis ENSTNIG00000011634 I 0.990
nova1 Danio rerio ENSDARG00000020178 I 0.990
NOVA1 Takifugu rubripes ENSTRUG00000006617 I 0.990
nova2 Danio rerio ENSDARG00000017673 I 0.973
NOVA1 Homo sapiens ENSG00000139910 D 0.939
nova1 Xenopus tropicalis ENSXETG00000010244 I 0.939
ENSG00000249644 Homo sapiens ENSG00000249644 I 0.939
NOVA2 Anolis carolinensis ENSACAG00000003724 I 0.939
AAH74252 Xenopus laevis AAH74252 I 0.939
ENSG00000248163 Homo sapiens ENSG00000248163 I 0.939
ENSPPYG00000005714 Pongo pygmaeus ENSPPYG00000005714 I 0.934
NOVA2 Felis catus ENSFCAG00000009509 I 0.934
NOVA2 Homo sapiens ENSG00000104967 D 0.934
NOVA1 Vicugna pacos ENSVPAG00000007807 I 0.934
NOVA1 Oryctolagus cuniculus ENSOCUG00000017622 I 0.934
NOVA1 Monodelphis domestica ENSMODG00000001830 I 0.934
NOVA1 Loxodonta africana ENSLAFG00000006455 I 0.934
NOVA1 Gorilla gorilla ENSGGOG00000016495 I 0.934
NOVA2 Oryctolagus cuniculus ENSOCUG00000022891 I 0.934
NOVA1 Pan troglodytes ENSPTRG00000006229 I 0.934
Nova1 Dipodomys ordii ENSDORG00000012633 I 0.934
NOVA2 Canis familiaris ENSCAFG00000004359 I 0.934
NOVA1 Canis familiaris ENSCAFG00000012492 I 0.934
NOVA2 Bos taurus ENSBTAG00000013157 I 0.934
NOVA1 Anolis carolinensis ENSACAG00000000477 I 0.934
NOVA1 Taeniopygia guttata ENSTGUG00000011799 I 0.934
NOVA1 Tupaia belangeri ENSTBEG00000009774 I 0.934
NOVA2 Pan troglodytes ENSPTRG00000011173 I 0.934
NOVA2 Sus scrofa ENSSSCG00000003095 I 0.934
LOC722459 Macaca mulatta ENSMMUG00000004271 I 0.934
LOC100389932 Callithrix jacchus ENSCJAG00000006217 I 0.934
NOVA1 Cavia porcellus ENSCPOG00000002579 I 0.934
NOVA1 Sorex araneus ENSSARG00000002599 I 0.934
Ame_R017219 Ailuropoda melanoleuca Ame_R017219 I 0.934
NOVA1 Spermophilus tridecemlineatus ENSSTOG00000001220 N 0.931
NOVA1 Sus scrofa ENSSSCG00000001976 N 0.931
NOVA1 Gallus gallus ENSGALG00000009850 N 0.931
ENSBTAG00000002170 Bos taurus ENSBTAG00000002170 N 0.931
LOC100053830 Equus caballus ENSECAG00000017068 N 0.931
NOVA2 Macropus eugenii ENSMEUG00000000562 N 0.931
Ame_R007838 Ailuropoda melanoleuca Ame_R007838 N 0.931
Nova1 Rattus norvegicus ENSRNOG00000031440 I 0.929
Nova2 Rattus norvegicus ENSRNOG00000013847 I 0.929
NOVA1 Pteropus vampyrus ENSPVAG00000002564 I 0.929
Nova2 Mus musculus ENSMUSG00000030411 D 0.929
Nova1 Mus musculus ENSMUSG00000021047 I 0.929
NOVA2 Myotis lucifugus ENSMLUG00000008039 I 0.924
LOC100402824 Callithrix jacchus ENSCJAG00000012121 I 0.924
NOVA2 Loxodonta africana ENSLAFG00000025917 I 0.924
NOVA1 Myotis lucifugus ENSMLUG00000016716 N 0.916
NOVA1 Choloepus hoffmanni ENSCHOG00000006617 I 0.904
NOVA1 Macropus eugenii ENSMEUG00000009112 N 0.901
NOVA1 Tarsius syrichta ENSTSYG00000014033 N 0.893
NOVA1 Procavia capensis ENSPCAG00000010303 N 0.878
NOVA1 Felis catus ENSFCAG00000004226 I 0.868
NOVA2 Pteropus vampyrus ENSPVAG00000006169 I 0.863
NOVA1 Meleagris gallopavo ENSMGAG00000012359 I 0.843
NOVA1 Erinaceus europaeus ENSEEUG00000013658 I 0.832
AAH72959 Xenopus laevis AAH72959 I 0.827
nova2 Xenopus tropicalis ENSXETG00000019101 I 0.822
AAH46731 Xenopus laevis AAH46731 N 0.817
NOVA2 Equus caballus ENSECAG00000024041 N 0.802
estExt_GenewiseH_1.C_6000020 Branchiostoma floridae estExt_GenewiseH_1.C_6000020 I 0.773
NOVA1 Echinops telfairi ENSETEG00000002159 I 0.756
NOVA1 Ornithorhynchus anatinus ENSOANG00000014015 N 0.740