CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
mgf016290m
(
Mimulus guttatus
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
mgf016290m
T07598_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf016290m
RRM
7
51
GKHFRRVRDVDMKRDYAFVEFSDPRDADDARYSMDGRDVDGRRII
mgf016290m
CCHC ZF
80
97
GRCFNCGLDGHWARDCKA
mgf016290m
CCHC ZF
102
119
NKCYRCGERGHIERSCQN
Links
Other
CCHC ZF,RRM
family RBPs
Other
Mimulus guttatus
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RS2Z33
Arabidopsis thaliana
AT2G37340-TAIR-G
N
0.728
At-RS2Z
Arabidopsis thaliana
AT3G53500-TAIR-G
N
0.753
GRMZM2G175419
Zea mays
GRMZM2G175419
N
0.791
GSVIVG00025580001
Vitis vinifera
GSVIVG00025580001
N
0.753
mgf009930m
Mimulus guttatus
mgf009930m
N
0.768
PK05606.1
Cannabis sativa
PK05606.1
N
0.827
A9PGS4_POPTR
Populus trichocarpa
POPTR_0006s23170
N
0.741
ppa009074m
Prunus persica
ppa009074m
N
0.707
ppa009671m
Prunus persica
ppa009671m
N
0.829