CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PK05606.1
(
Cannabis sativa
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
PK05606.1
T07127_0.6
Cannabis sativa genome (2012-Feb-20)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK05606.1
RRM
1
40
RVRDVDMKRDFAFVEFGDPRDADDARYSLDGREFDGSRLI
PK05606.1
CCHC ZF
64
81
GRCFNCGLDGHWARDCKA
PK05606.1
CCHC ZF
86
103
NKCYRCGERGHIERQCNN
Links
Other
CCHC ZF,RRM
family RBPs
Other
Cannabis sativa
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ppa009671m
Prunus persica
ppa009671m
N
0.866
mgf016290m
Mimulus guttatus
mgf016290m
N
0.827
A9PGS4_POPTR
Populus trichocarpa
POPTR_0006s23170
N
0.803
GSVIVG00025580001
Vitis vinifera
GSVIVG00025580001
N
0.803
RS2Z33
Arabidopsis thaliana
AT2G37340-TAIR-G
N
0.789
At-RS2Z
Arabidopsis thaliana
AT3G53500-TAIR-G
N
0.789
LOC_Os01g06290
Oryza sativa
LOC_Os01g06290
N
0.750
GRMZM2G083975
Zea mays
GRMZM2G083975
N
0.724
ppa009294m
Prunus persica
ppa009294m
N
0.717
ppa009074m
Prunus persica
ppa009074m
N
0.707