LOC_Os06g23890 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os06g23890 T11614_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os06g23890.1 CCHC ZF 259 276

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

24 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30075.m001186 Ricinus communis 30075.m001186 N 0.000
DRT111 Arabidopsis thaliana AT1G30480-TAIR-G N 0.000
BGIOSIBCE002155 Oryza indica BGIOSIBCE002155 N 0.000
cassava24157.valid.m1 Manihot esculenta cassava24157.valid.m1 N 0.000
cassava31871.valid.m1 Manihot esculenta cassava31871.valid.m1 N 0.000
chr4.CM0229.230.nc Lotus japonicus chr4.CM0229.230.nc N 0.000
Cucsa.048210 Cucumis sativus Cucsa.048210 N 0.000
estExt_fgenesh1_pg.C_2810007 Physcomitrella patens estExt_fgenesh1_pg.C_2810007 N 0.000
XM_002890828.1 Arabidopsis lyrata fgenesh2_kg.1__3230__AT1G30480.1 N 0.000
Glyma07g35050.1 Glycine max Glyma07g35050.1 N 0.000
Glyma20g02910.1 Glycine max Glyma20g02910.1 N 0.000
GRMZM2G003527 Zea mays GRMZM2G003527 N 0.000
GRMZM2G145034 Zea mays GRMZM2G145034 N 0.000
GSVIVG00021628001 Vitis vinifera GSVIVG00021628001 N 0.000
LOC_Os01g34190 Oryza sativa LOC_Os01g34190 N 0.000
MDP0000162585 Malus x domestica MDP0000162585 N 0.000
Medtr4g115110 Medicago truncatula Medtr4g115110 N 0.000
mgf008467m Mimulus guttatus mgf008467m N 0.000
PDK_20s1617311g001 Phoenix dactylifera PDK_20s1617311g001 N 0.000
PK13606.1 Cannabis sativa PK13606.1 N 0.000
B9GGD6_POPTR Populus trichocarpa POPTR_0001s38150 N 0.000
ppa007087m Prunus persica ppa007087m N 0.000
SB10G003990 Sorghum bicolor Sb10g003990 N 0.000