LOC_Os12g35800 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os12g35800 T12644_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os12g35800.1 CCHC ZF 201 218

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

157 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
27810.m000633 Ricinus communis 27810.m000633 N 0.000
27810.m000634 Ricinus communis 27810.m000634 N 0.000
30169.m006450 Ricinus communis 30169.m006450 N 0.000
BGIOSIBCE012624 Oryza indica BGIOSIBCE012624 N 0.000
cassava15503.m1 Manihot esculenta cassava15503.m1 N 0.000
cassava2141.valid.m1 Manihot esculenta cassava2141.valid.m1 N 0.000
cassava29664.valid.m1 Manihot esculenta cassava29664.valid.m1 N 0.000
cassava38259.valid.m1 Manihot esculenta cassava38259.valid.m1 N 0.000
Cucsa.195210 Cucumis sativus Cucsa.195210 N 0.000
Glyma03g29500.1 Glycine max Glyma03g29500.1 N 0.000
Glyma09g15600.1 Glycine max Glyma09g15600.1 N 0.000
Glyma10g21950.1 Glycine max Glyma10g21950.1 N 0.000
Glyma12g36600.1 Glycine max Glyma12g36600.1 N 0.000
Glyma13g27280.1 Glycine max Glyma13g27280.1 N 0.000
Glyma15g43030.1 Glycine max Glyma15g43030.1 N 0.000
Glyma19g32340.1 Glycine max Glyma19g32340.1 N 0.000
GRMZM2G001279 Zea mays GRMZM2G001279 N 0.000
GRMZM2G180979 Zea mays GRMZM2G180979 N 0.000
GSVIVG00025263001 Vitis vinifera GSVIVG00025263001 N 0.000
GSVIVG00032093001 Vitis vinifera GSVIVG00032093001 N 0.000
GSVIVG00033316001 Vitis vinifera GSVIVG00033316001 N 0.000
gw1.1.1274.1 Selaginella moellendorfii gw1.1.1274.1 N 0.000
LjSGA_020949.1 Lotus japonicus LjSGA_020949.1 N 0.000
LOC_Os03g49170 Oryza sativa LOC_Os03g49170 N 0.000
MDP0000474039 Malus x domestica MDP0000474039 N 0.000
Medtr7g110710 Medicago truncatula Medtr7g110710 N 0.000
mgf001768m Mimulus guttatus mgf001768m N 0.000
mgf002682m Mimulus guttatus mgf002682m N 0.000
A9PAD3_POPTR Populus trichocarpa POPTR_0001s27370 N 0.000
B9H9X3_POPTR Populus trichocarpa POPTR_0006s05240 N 0.000
B9H9X4_POPTR Populus trichocarpa POPTR_0006s05250 N 0.000
B9HNP7_POPTR Populus trichocarpa POPTR_0009s06580 N 0.000
B9II60_POPTR Populus trichocarpa POPTR_0016s05410 N 0.000
ppa002189m Prunus persica ppa002189m N 0.000
SB01G011150 Sorghum bicolor Sb01g011150 N 0.000