cassava2141.valid.m1 (Manihot esculenta)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 cassava2141.valid.m1 T04758_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava2141.valid.m1 CCCH ZF 228 250
cassava2141.valid.m1 CCCH ZF 257 271

Links

Other CCCH ZF family RBPs
Other Manihot esculenta RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30169.m006450 Ricinus communis 30169.m006450 N 0.875
GSVIVG00025263001 Vitis vinifera GSVIVG00025263001 N 0.868
27810.m000633 Ricinus communis 27810.m000633 N 0.825
27810.m000634 Ricinus communis 27810.m000634 N 0.825
cassava29664.valid.m1 Manihot esculenta cassava29664.valid.m1 N 0.825
Glyma15g43030.1 Glycine max Glyma15g43030.1 N 0.825
ppa002189m Prunus persica ppa002189m N 0.825
GSVIVG00032093001 Vitis vinifera GSVIVG00032093001 N 0.825
MDP0000474039 Malus x domestica MDP0000474039 N 0.825
gw1.1.1274.1 Selaginella moellendorfii gw1.1.1274.1 N 0.825
Glyma13g27280.1 Glycine max Glyma13g27280.1 N 0.825
Glyma10g21950.1 Glycine max Glyma10g21950.1 N 0.825
Glyma09g15600.1 Glycine max Glyma09g15600.1 N 0.825
cassava15503.m1 Manihot esculenta cassava15503.m1 N 0.825
Cucsa.195210 Cucumis sativus Cucsa.195210 N 0.825
cassava38259.valid.m1 Manihot esculenta cassava38259.valid.m1 N 0.825
Glyma12g36600.1 Glycine max Glyma12g36600.1 N 0.825
A9PAD3_POPTR Populus trichocarpa POPTR_0001s27370 N 0.805
mgf002682m Mimulus guttatus mgf002682m N 0.805
B9H9X3_POPTR Populus trichocarpa POPTR_0006s05240 N 0.800
B9H9X4_POPTR Populus trichocarpa POPTR_0006s05250 N 0.800
LOC_Os03g49170 Oryza sativa LOC_Os03g49170 N 0.800
SB01G011150 Sorghum bicolor Sb01g011150 N 0.800
B9II60_POPTR Populus trichocarpa POPTR_0016s05410 N 0.800
LjSGA_020949.1 Lotus japonicus LjSGA_020949.1 N 0.800
GRMZM2G001279 Zea mays GRMZM2G001279 N 0.800
mgf001768m Mimulus guttatus mgf001768m N 0.800
Cucsa.336920 Cucumis sativus Cucsa.336920 N 0.800
GSVIVG00033316001 Vitis vinifera GSVIVG00033316001 N 0.800
GRMZM2G180979 Zea mays GRMZM2G180979 N 0.800
BGIOSIBCE012624 Oryza indica BGIOSIBCE012624 N 0.800
Medtr7g110710 Medicago truncatula Medtr7g110710 N 0.800
B9HNP7_POPTR Populus trichocarpa POPTR_0009s06580 N 0.780
Glyma19g32340.1 Glycine max Glyma19g32340.1 N 0.775
Glyma03g29500.1 Glycine max Glyma03g29500.1 N 0.775