B9H9X4_POPTR (Populus trichocarpa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 POPTR_0006s05250 T04031_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s05250.1 CCCH ZF 277 299
POPTR_0006s05250.1 CCCH ZF 306 322

Links

Other CCCH ZF family RBPs
Other Populus trichocarpa RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9II60_POPTR Populus trichocarpa POPTR_0016s05410 N 1.000
B9H9X3_POPTR Populus trichocarpa POPTR_0006s05240 N 1.000
Cucsa.336920 Cucumis sativus Cucsa.336920 N 0.975
MDP0000474039 Malus x domestica MDP0000474039 N 0.975
LjSGA_020949.1 Lotus japonicus LjSGA_020949.1 N 0.975
Glyma19g32340.1 Glycine max Glyma19g32340.1 N 0.975
cassava38259.valid.m1 Manihot esculenta cassava38259.valid.m1 N 0.975
Medtr7g110710 Medicago truncatula Medtr7g110710 N 0.975
GSVIVG00032093001 Vitis vinifera GSVIVG00032093001 N 0.975
27810.m000634 Ricinus communis 27810.m000634 N 0.975
27810.m000633 Ricinus communis 27810.m000633 N 0.975
ppa002189m Prunus persica ppa002189m N 0.975
GSVIVG00033316001 Vitis vinifera GSVIVG00033316001 N 0.975
cassava15503.m1 Manihot esculenta cassava15503.m1 N 0.975
mgf002682m Mimulus guttatus mgf002682m N 0.951
Glyma13g27280.1 Glycine max Glyma13g27280.1 N 0.950
Glyma15g43030.1 Glycine max Glyma15g43030.1 N 0.950
Glyma09g15600.1 Glycine max Glyma09g15600.1 N 0.950
cassava29664.valid.m1 Manihot esculenta cassava29664.valid.m1 N 0.950
Cucsa.195210 Cucumis sativus Cucsa.195210 N 0.950
Glyma10g21950.1 Glycine max Glyma10g21950.1 N 0.950
Glyma12g36600.1 Glycine max Glyma12g36600.1 N 0.950
A9PAD3_POPTR Populus trichocarpa POPTR_0001s27370 N 0.927
SB01G011150 Sorghum bicolor Sb01g011150 N 0.925
BGIOSIBCE012624 Oryza indica BGIOSIBCE012624 N 0.925
LOC_Os03g49170 Oryza sativa LOC_Os03g49170 N 0.925
Glyma03g29500.1 Glycine max Glyma03g29500.1 N 0.925
gw1.1.1274.1 Selaginella moellendorfii gw1.1.1274.1 N 0.925
GRMZM2G001279 Zea mays GRMZM2G001279 N 0.925
mgf001768m Mimulus guttatus mgf001768m N 0.925
GRMZM2G180979 Zea mays GRMZM2G180979 N 0.925
B9HNP7_POPTR Populus trichocarpa POPTR_0009s06580 N 0.902
GSVIVG00025263001 Vitis vinifera GSVIVG00025263001 N 0.875
cassava2141.valid.m1 Manihot esculenta cassava2141.valid.m1 N 0.800
30169.m006450 Ricinus communis 30169.m006450 N 0.800