B9HNP7_POPTR (Populus trichocarpa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 POPTR_0009s06580 T04049_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s06580.1 CCCH ZF 318 340
POPTR_0009s06580.1 CCCH ZF 347 364

Links

Other CCCH ZF family RBPs
Other Populus trichocarpa RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A9PAD3_POPTR Populus trichocarpa POPTR_0001s27370 N 0.976
Cucsa.195210 Cucumis sativus Cucsa.195210 N 0.951
Glyma09g15600.1 Glycine max Glyma09g15600.1 N 0.951
Glyma13g27280.1 Glycine max Glyma13g27280.1 N 0.951
mgf002682m Mimulus guttatus mgf002682m N 0.951
Glyma15g43030.1 Glycine max Glyma15g43030.1 N 0.951
cassava29664.valid.m1 Manihot esculenta cassava29664.valid.m1 N 0.951
Glyma12g36600.1 Glycine max Glyma12g36600.1 N 0.951
cassava38259.valid.m1 Manihot esculenta cassava38259.valid.m1 N 0.927
MDP0000474039 Malus x domestica MDP0000474039 N 0.927
SB01G011150 Sorghum bicolor Sb01g011150 N 0.927
GRMZM2G001279 Zea mays GRMZM2G001279 N 0.927
GRMZM2G180979 Zea mays GRMZM2G180979 N 0.927
27810.m000633 Ricinus communis 27810.m000633 N 0.927
27810.m000634 Ricinus communis 27810.m000634 N 0.927
BGIOSIBCE012624 Oryza indica BGIOSIBCE012624 N 0.927
LOC_Os03g49170 Oryza sativa LOC_Os03g49170 N 0.927
cassava15503.m1 Manihot esculenta cassava15503.m1 N 0.927
ppa002189m Prunus persica ppa002189m N 0.927
GSVIVG00033316001 Vitis vinifera GSVIVG00033316001 N 0.927
Glyma10g21950.1 Glycine max Glyma10g21950.1 N 0.927
Medtr7g110710 Medicago truncatula Medtr7g110710 N 0.902
LjSGA_020949.1 Lotus japonicus LjSGA_020949.1 N 0.902
gw1.1.1274.1 Selaginella moellendorfii gw1.1.1274.1 N 0.902
B9H9X3_POPTR Populus trichocarpa POPTR_0006s05240 N 0.902
Cucsa.336920 Cucumis sativus Cucsa.336920 N 0.902
B9H9X4_POPTR Populus trichocarpa POPTR_0006s05250 N 0.902
B9II60_POPTR Populus trichocarpa POPTR_0016s05410 N 0.902
mgf001768m Mimulus guttatus mgf001768m N 0.902
Glyma19g32340.1 Glycine max Glyma19g32340.1 N 0.878
GSVIVG00032093001 Vitis vinifera GSVIVG00032093001 N 0.878
GSVIVG00025263001 Vitis vinifera GSVIVG00025263001 N 0.854
Glyma03g29500.1 Glycine max Glyma03g29500.1 N 0.829
30169.m006450 Ricinus communis 30169.m006450 N 0.780
cassava2141.valid.m1 Manihot esculenta cassava2141.valid.m1 N 0.780