CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Minc12116
(
Meloidogyne incognita
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
Minc12116
T16137_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Minc12116
CCHC ZF
1108
1125
RTCFNCGKAGHFARECNT
Links
Other
CCHC ZF
family RBPs
Other
Meloidogyne incognita
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH78008
Xenopus laevis
AAH78008
N
0.000
amel4_ncbi_hmm3606
Apis mellifera
amel4_ncbi_hmm3606
N
0.000
BGIBMGA008619
Bombyx mori
BGIBMGA008619
N
0.000
CPIJ002557
Culex quinquefasciatus
CPIJ002557
N
0.000
CpipJ_CPIJ002557
Culex pipiens
CpipJ_CPIJ002557
N
0.000
aff4
Danio rerio
ENSDARG00000001857
N
0.000
ENSRNOG00000031218
Rattus norvegicus
ENSRNOG00000031218
N
0.000
zcchc10
Xenopus tropicalis
ENSXETG00000004171
N
0.000
e_gw.326.71.1
Branchiostoma floridae
e_gw.326.71.1
N
0.000
CG5516
Drosophila melanogaster
FBgn0038389
N
0.000
GA18942-RA
Drosophila pseudoobscura
FBgn0078941
N
0.000
nasonia_NCBI_hmm378444
Nasonia vitripennis
nasonia_NCBI_hmm378444
N
0.000