CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC100072419
(
Equus caballus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSECAG00000015036
T18705_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ANKHD1
M002_0.6
Homo sapiens
AGACGWW
RNAcompete
Ray et al.(2013)
RNCMPT00002
1.000
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSECAP00000013421
KH
1695
1757
SKKLSVPASVVSRIMGRGGCNITAIQDVTGAHIDVDKQKDKNGERMITIRGGTESTRYAVQLI
ENSECAP00000013446
KH
1695
1757
SKKLSVPASVVSRIMGRGGCNITAIQDVTGAHIDVDKQKDKNGERMITIRGGTESTRYAVQLI
Links
Other
KH
family RBPs
Other
Equus caballus
RBPs
72 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
182.m000593
Tetrahymena thermophila
182.m000593
N
0.000
182.m00068
Tetrahymena thermophila
182.m00068
N
0.000
3812.m02559
Tetrahymena thermophila
3812.m02559
N
0.000
PTTG_04682
Puccinia triticina
PTTG_04682
N
0.000
PTTG_09292
Puccinia triticina
PTTG_09292
N
0.000