CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
estExt_Genewise1Plus.C_91132
(
Trichoderma virens
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
estExt_Genewise1Plus.C_91132
T20979_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1Plus.C_91132
KH
181
230
QSRAIGRIAGHQGKTKFAIENASRTRIVLADSKIHILGGFKNIHMARESV
Links
Other
KH
family RBPs
Other
Trichoderma virens
RBPs
162 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Bm1_45785
Brugia malayi
Bm1_45785
N
0.000
CBG03563
Caenorhabditis briggsae
CBG03563
I
0.000
CBN06053
Caenorhabditis brenneri
CBN06053
I
0.000
CJA01159
Caenorhabditis japonica
CJA01159
I
0.000
CRE13382
Caenorhabditis remanei
CRE13382
I
0.000
SRSF1
Anolis carolinensis
ENSACAG00000005542
I
0.000
fgenesh2_pg.scaffold_118000083
Branchiostoma floridae
fgenesh2_pg.scaffold_118000083
I
0.000
LOAG_04332
Loa loa
LOAG_04332
N
0.000
LOAG_04334
Loa loa
LOAG_04334
N
0.000
LOAG_10275
Loa loa
LOAG_10275
I
0.000
WUBG_03274
Wuchereria bancrofti
WUBG_03274
N
0.000
rsp-3
Caenorhabditis elegans
Y111B2A.18
I
0.000