fgenesh2_pg.scaffold_118000083 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_pg.scaffold_118000083 T52211_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.827
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.827
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.827
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.827
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.827
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.827
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.827
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.827
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.827
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.827
SRSF9
M333_0.6 		Homo sapiens AGGAY SELEX
Cook et al.(2011)
797_17548433 		0.722
SRSF9
M072_0.6 		Homo sapiens AKGAVMR RNAcompete
Ray et al.(2013)
RNCMPT00074 		0.722
SRSF9
M065_0.6 		Homo sapiens KGRWGSM RNAcompete
Ray et al.(2013)
RNCMPT00067 		0.722
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_118000083 RRM 10 76
fgenesh2_pg.scaffold_118000083 RRM 105 168

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

109 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw.425.15.1 Branchiostoma floridae e_gw.425.15.1 I 0.985
AAI23123 Xenopus laevis AAI23123 I 0.848
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.848
AAH42354 Xenopus laevis AAH42354 I 0.848
AAI28932 Xenopus laevis AAI28932 I 0.848
srsf1 Xenopus tropicalis ENSXETG00000008954 I 0.848
estExt_fgenesh2_pm.C_1180016 Branchiostoma floridae estExt_fgenesh2_pm.C_1180016 I 0.847
gw1.25.268.1 Lottia gigantea gw1.25.268.1 I 0.847
LOC100056763 Equus caballus ENSECAG00000016654 I 0.841
SRSF1 Homo sapiens ENSG00000136450 D 0.841
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.841
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.841
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.841
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.841
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.841
Srsf1 Mus musculus ENSMUSG00000018379 I 0.841
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.841
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.841
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.841
ISCW014398 Ixodes scapularis ISCW014398 I 0.841
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.841
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.841
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.841
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.841
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.841
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.841
srsf1a Danio rerio ENSDARG00000057691 I 0.833
SRSF1 Vicugna pacos ENSVPAG00000010094 I 0.833
gw.425.18.1 Branchiostoma floridae gw.425.18.1 I 0.832
SRSF1 Microcebus murinus ENSMICG00000013639 I 0.826
ENSGACG00000020621 Gasterosteus aculeatus ENSGACG00000020621 I 0.826
SRSF1 Erinaceus europaeus ENSEEUG00000009255 I 0.826
SRSF1 Myotis lucifugus ENSMLUG00000011040 I 0.826
ENSOCUG00000017678 Oryctolagus cuniculus ENSOCUG00000017678 I 0.826
SRSF1 Spermophilus tridecemlineatus ENSSTOG00000000243 I 0.826
SRSF1 Sorex araneus ENSSARG00000010949 I 0.826
LOC100392422 Callithrix jacchus ENSCJAG00000035311 I 0.826
SRSF1 Monodelphis domestica ENSMODG00000014781 I 0.826
ENSMUSG00000090049 Mus musculus ENSMUSG00000090049 I 0.826
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.818
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.818
amel4_ncbi_hmm5595 Apis mellifera amel4_ncbi_hmm5595 I 0.818
nasonia_NCBI_hmm519234 Nasonia vitripennis nasonia_NCBI_hmm519234 I 0.811
e_gw1.83.149.1 Daphnia pulex e_gw1.83.149.1 I 0.811
SRSF1 Echinops telfairi ENSETEG00000005349 I 0.811
SRSF1 Tupaia belangeri ENSTBEG00000015378 I 0.811
ENSCSAVG00000006093 Ciona savignyi ENSCSAVG00000006093 I 0.811
ENSGACG00000011094 Gasterosteus aculeatus ENSGACG00000011094 I 0.803
ENSMMUG00000003260 Macaca mulatta ENSMMUG00000003260 I 0.803
ENSORLG00000004580 Oryzias latipes ENSORLG00000004580 I 0.799
SRSF1 Takifugu rubripes ENSTRUG00000017058 I 0.795
Sjc_0030490 Schistosoma japonicum Sjc_0030490 I 0.789
Smp_185230 Schistosoma mansoni Smp_185230 I 0.789
BGIBMGA013096 Bombyx mori BGIBMGA013096 I 0.788
DGIL_AUG5s14011g9t1 Acyrtosiphon pisum DGIL_AUG5s14011g9t1 I 0.788
ENSCING00000007375 Ciona intestinalis ENSCING00000007375 I 0.788
LOC100400391 Callithrix jacchus ENSCJAG00000008111 I 0.773
Minc06188 Meloidogyne incognita Minc06188 I 0.767
Minc04015 Meloidogyne incognita Minc04015 I 0.767
SRSF1 Tetraodon nigroviridis ENSTNIG00000009993 I 0.767
Ppa-rsp-3 Pristionchus pacificus PPA25378 I 0.765
LOC100392422 Callithrix jacchus ENSCJAG00000014041 I 0.765
186029 Helobdella robusta 186029 I 0.765
AAEL006473 Aedes aegypti AAEL006473 I 0.758
CPIJ008786 Culex quinquefasciatus CPIJ008786 I 0.750
GL22249 Drosophila persimilis FBgn0159841 I 0.750
GA20008-RA Drosophila pseudoobscura FBgn0080004 I 0.750
CpipJ_CPIJ008786 Culex pipiens CpipJ_CPIJ008786 I 0.750
fgenesh1_pg.scaffold_37000136 Nematostella vectensis fgenesh1_pg.scaffold_37000136 I 0.744
GK13511 Drosophila willistoni FBgn0215519 I 0.742
GE26323 Drosophila yakuba FBgn0243353 I 0.742
AGAP010496 Anopheles gambiae AGAP010496 I 0.742
GF16525 Drosophila ananassae FBgn0093546 I 0.742
CRE13382 Caenorhabditis remanei CRE13382 I 0.742
CBN06053 Caenorhabditis brenneri CBN06053 I 0.742
GH18077 Drosophila grimshawi FBgn0125545 I 0.742
rsp-3 Caenorhabditis elegans Y111B2A.18 I 0.735
LOAG_10275 Loa loa LOAG_10275 I 0.735
CJA01159 Caenorhabditis japonica CJA01159 I 0.727
97475 Helobdella robusta 97475 N 0.727
CBG03563 Caenorhabditis briggsae CBG03563 I 0.727
SRSF9 Anolis carolinensis ENSACAG00000002877 I 0.724
SRSF9 Monodelphis domestica ENSMODG00000003146 I 0.724
SRSF9 Cavia porcellus ENSCPOG00000006813 I 0.722
SRSF9 Dasypus novemcinctus ENSDNOG00000012598 I 0.722
Ame_R019329 Ailuropoda melanoleuca Ame_R019329 I 0.722
Srsf9 Dipodomys ordii ENSDORG00000013162 I 0.722
Sfrs9 Rattus norvegicus ENSRNOG00000001163 I 0.722
SRSF9 Canis familiaris ENSCAFG00000010314 I 0.722
SRSF9 Otolemur garnettii ENSOGAG00000003852 I 0.722
SRSF9 Oryctolagus cuniculus ENSOCUG00000024603 I 0.722
Srsf9 Mus musculus ENSMUSG00000029538 I 0.722
ENSPPYG00000005031 Pongo pygmaeus ENSPPYG00000005031 I 0.722
SRSF9 Myotis lucifugus ENSMLUG00000010346 I 0.722
SRSF9 Sus scrofa ENSSSCG00000009906 I 0.722
SRSF9 Pteropus vampyrus ENSPVAG00000002229 I 0.722
SRSF9 Microcebus murinus ENSMICG00000008674 I 0.722
SRSF9 Pan troglodytes ENSPTRG00000005535 I 0.722
SRSF9 Homo sapiens ENSG00000111786 D 0.722
Bm1_45785 Brugia malayi Bm1_45785 N 0.720
LOAG_04334 Loa loa LOAG_04334 N 0.720
WUBG_03274 Wuchereria bancrofti WUBG_03274 N 0.720
SRSF9 Ochotona princeps ENSOPRG00000004234 I 0.714
LOAG_04332 Loa loa LOAG_04332 N 0.712
ENSOCUG00000010894 Oryctolagus cuniculus ENSOCUG00000010894 I 0.712
Bm1_45780 Brugia malayi Bm1_45780 N 0.712
A4FUC6_BOVIN Bos taurus ENSBTAG00000012792 I 0.707
ENSPPYG00000019910 Pongo pygmaeus ENSPPYG00000019910 I 0.707
SRSF9 Gasterosteus aculeatus ENSGACG00000016921 I 0.701