LOAG_10275 (Loa loa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOAG_10275 T29647_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.758
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.758
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.758
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.758
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.758
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.758
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.758
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.758
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.758
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.758
SRSF9
M333_0.6 		Homo sapiens AGGAY SELEX
Cook et al.(2011)
797_17548433 		0.716
SRSF9
M072_0.6 		Homo sapiens AKGAVMR RNAcompete
Ray et al.(2013)
RNCMPT00074 		0.716
SRSF9
M065_0.6 		Homo sapiens KGRWGSM RNAcompete
Ray et al.(2013)
RNCMPT00067 		0.716
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
LOAG_10275T0 RRM 7 73
LOAG_10275T0 RRM 118 181

Links

Other RRM family RBPs
Other Loa loa RBPs

95 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Bm1_38325 Brugia malayi Bm1_38325 N 0.897
WUBG_07186 Wuchereria bancrofti WUBG_07186 N 0.897
srsf1a Danio rerio ENSDARG00000057691 I 0.765
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.765
SRSF1 Homo sapiens ENSG00000136450 D 0.758
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.758
LOC100056763 Equus caballus ENSECAG00000016654 I 0.758
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.758
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.758
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.758
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.758
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.758
srsf1 Xenopus tropicalis ENSXETG00000008954 I 0.758
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.758
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.758
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.758
Srsf1 Mus musculus ENSMUSG00000018379 I 0.758
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.758
AAH42354 Xenopus laevis AAH42354 I 0.758
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.758
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.758
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.758
AAI28932 Xenopus laevis AAI28932 I 0.758
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.758
AAI23123 Xenopus laevis AAI23123 I 0.758
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.750
SRSF1 Vicugna pacos ENSVPAG00000010094 I 0.750
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.750
rsp-3 Caenorhabditis elegans Y111B2A.18 I 0.748
DGIL_AUG5s14011g9t1 Acyrtosiphon pisum DGIL_AUG5s14011g9t1 I 0.748
CPIJ008786 Culex quinquefasciatus CPIJ008786 I 0.748
CpipJ_CPIJ008786 Culex pipiens CpipJ_CPIJ008786 I 0.748
ISCW014398 Ixodes scapularis ISCW014398 I 0.748
AAEL006473 Aedes aegypti AAEL006473 I 0.748
e_gw1.83.149.1 Daphnia pulex e_gw1.83.149.1 I 0.748
SRSF1 Monodelphis domestica ENSMODG00000014781 I 0.742
LOC100392422 Callithrix jacchus ENSCJAG00000035311 I 0.742
ENSOCUG00000017678 Oryctolagus cuniculus ENSOCUG00000017678 I 0.742
SRSF1 Spermophilus tridecemlineatus ENSSTOG00000000243 I 0.742
SRSF1 Sorex araneus ENSSARG00000010949 I 0.742
ENSMUSG00000090049 Mus musculus ENSMUSG00000090049 I 0.742
SRSF1 Myotis lucifugus ENSMLUG00000011040 I 0.742
ENSGACG00000011094 Gasterosteus aculeatus ENSGACG00000011094 I 0.742
ENSGACG00000020621 Gasterosteus aculeatus ENSGACG00000020621 I 0.742
SRSF1 Microcebus murinus ENSMICG00000013639 I 0.742
SRSF1 Erinaceus europaeus ENSEEUG00000009255 I 0.742
nasonia_NCBI_hmm519234 Nasonia vitripennis nasonia_NCBI_hmm519234 I 0.740
amel4_ncbi_hmm5595 Apis mellifera amel4_ncbi_hmm5595 I 0.740
CBN06053 Caenorhabditis brenneri CBN06053 I 0.740
CRE13382 Caenorhabditis remanei CRE13382 I 0.740
ENSORLG00000004580 Oryzias latipes ENSORLG00000004580 I 0.739
SRSF1 Echinops telfairi ENSETEG00000005349 I 0.735
SRSF1 Takifugu rubripes ENSTRUG00000017058 I 0.735
fgenesh2_pg.scaffold_118000083 Branchiostoma floridae fgenesh2_pg.scaffold_118000083 I 0.735
GE26323 Drosophila yakuba FBgn0243353 I 0.733
CJA01159 Caenorhabditis japonica CJA01159 I 0.733
CBG03563 Caenorhabditis briggsae CBG03563 I 0.733
SRSF9 Myotis lucifugus ENSMLUG00000010346 I 0.729
Ppa-rsp-3 Pristionchus pacificus PPA25378 I 0.727
ENSMMUG00000003260 Macaca mulatta ENSMMUG00000003260 I 0.727
GK13511 Drosophila willistoni FBgn0215519 I 0.725
AGAP010496 Anopheles gambiae AGAP010496 I 0.725
GL22249 Drosophila persimilis FBgn0159841 I 0.725
GF16525 Drosophila ananassae FBgn0093546 I 0.725
GH18077 Drosophila grimshawi FBgn0125545 I 0.725
GA20008-RA Drosophila pseudoobscura FBgn0080004 I 0.725
Ame_R019329 Ailuropoda melanoleuca Ame_R019329 I 0.722
SRSF9 Otolemur garnettii ENSOGAG00000003852 I 0.722
SRSF9 Cavia porcellus ENSCPOG00000006813 I 0.722
SRSF9 Oryctolagus cuniculus ENSOCUG00000024603 I 0.722
SRSF9 Homo sapiens ENSG00000111786 D 0.722
Srsf9 Dipodomys ordii ENSDORG00000013162 I 0.722
SRSF9 Canis familiaris ENSCAFG00000010314 I 0.722
SRSF9 Dasypus novemcinctus ENSDNOG00000012598 I 0.722
SRSF9 Ochotona princeps ENSOPRG00000004234 I 0.722
SRSF9 Microcebus murinus ENSMICG00000008674 I 0.722
Sfrs9 Rattus norvegicus ENSRNOG00000001163 I 0.722
SRSF9 Sus scrofa ENSSSCG00000009906 I 0.722
ENSPPYG00000005031 Pongo pygmaeus ENSPPYG00000005031 I 0.722
SRSF9 Pteropus vampyrus ENSPVAG00000002229 I 0.722
SRSF9 Pan troglodytes ENSPTRG00000005535 I 0.722
gw1.25.268.1 Lottia gigantea gw1.25.268.1 I 0.720
SRSF1 Tupaia belangeri ENSTBEG00000015378 I 0.720
e_gw.425.15.1 Branchiostoma floridae e_gw.425.15.1 I 0.720
BGIBMGA013096 Bombyx mori BGIBMGA013096 I 0.718
Minc06188 Meloidogyne incognita Minc06188 I 0.714
Minc04015 Meloidogyne incognita Minc04015 I 0.714
Srsf9 Mus musculus ENSMUSG00000029538 I 0.714
ENSPPYG00000019910 Pongo pygmaeus ENSPPYG00000019910 I 0.714
estExt_fgenesh2_pm.C_1180016 Branchiostoma floridae estExt_fgenesh2_pm.C_1180016 I 0.712
ENSCSAVG00000006093 Ciona savignyi ENSCSAVG00000006093 I 0.710
A4FUC6_BOVIN Bos taurus ENSBTAG00000012792 I 0.707
LOC100392422 Callithrix jacchus ENSCJAG00000014041 I 0.705
ENSCING00000007375 Ciona intestinalis ENSCING00000007375 I 0.702
Bm1_45780 Brugia malayi Bm1_45780 N 0.702