CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSPPYG00000012399
(
Pongo pygmaeus
)
KH,S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
PF00575 (S1)
IPR018111
IPR003029
ENSPPYG00000012399
T22377_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPPYP00000013832
KH
609
666
VETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEETFSVFAPTPSALHEARDFI
ENSPPYP00000013832
S1
677
752
QLEFGAVYTATITEIRDTGVMVKLYPNMTAVLLHNTQLDQRKIRHPTALGLEVGQEIQVKYFGRDPADGRMRLSRK
ENSPPYP00000013833
KH
529
586
VETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEETFSVFAPTPSALHEARDFI
ENSPPYP00000013833
S1
597
672
QLEFGAVYTATITEIRDTGVMVKLYPNMTAVLLHNTQLDQRKIRHPTALGLEVGQEIQVKYFGRDPADGRMRLSRK
ENSPPYP00000013834
KH
607
664
VETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEETFSVFAPTPSALHEARDFI
ENSPPYP00000013834
S1
675
750
QLEFGAVYTATITEIRDTGVMVKLYPNMTAVLLHNTQLDQRKIRHPTALGLEVGQEIQVKYFGRDPADGRMRLSRK
Links
Other
KH,S1
family RBPs
Other
Pongo pygmaeus
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R001792
Ailuropoda melanoleuca
Ame_R001792
N
0.978
PNPT1
Anolis carolinensis
ENSACAG00000003692
N
0.888
PNPT1
Bos taurus
ENSBTAG00000008909
N
0.963
PNPT1
Canis familiaris
ENSCAFG00000002891
N
0.970
PNPT1
Choloepus hoffmanni
ENSCHOG00000007360
N
0.955
PNPT1
Callithrix jacchus
ENSCJAG00000009740
N
0.978
PNPT1
Cavia porcellus
ENSCPOG00000011008
N
0.940
LOC100052355
Equus caballus
ENSECAG00000020058
N
0.963
PNPT1
Echinops telfairi
ENSETEG00000001582
N
0.858
PNPT1
Felis catus
ENSFCAG00000013236
N
0.955
PNPT1
Homo sapiens
ENSG00000138035
N
0.985
PNPT1
Gasterosteus aculeatus
ENSGACG00000010840
N
0.813
PNPT1
Gallus gallus
ENSGALG00000007935
N
0.843
PNPT1
Gorilla gorilla
ENSGGOG00000006867
N
0.830
PNPT1
Meleagris gallopavo
ENSMGAG00000001952
N
0.858
PNPT1
Myotis lucifugus
ENSMLUG00000003886
N
0.940
PNPT1
Monodelphis domestica
ENSMODG00000001984
N
0.903
Pnpt1
Mus musculus
ENSMUSG00000020464
N
0.948
ENSOANG00000011178
Ornithorhynchus anatinus
ENSOANG00000011178
N
0.876
PNPT1
Oryctolagus cuniculus
ENSOCUG00000006889
N
0.948
PNPT1
Ochotona princeps
ENSOPRG00000010232
N
0.925
PNPT1
Oryzias latipes
ENSORLG00000004335
N
0.836
PNPT1
Procavia capensis
ENSPCAG00000010806
N
0.963
PNPT1
Pan troglodytes
ENSPTRG00000011934
N
0.985
Pnpt1
Rattus norvegicus
ENSRNOG00000003600
N
0.940
PNPT1
Sus scrofa
ENSSSCG00000008399
N
0.963
PNPT1
Spermophilus tridecemlineatus
ENSSTOG00000006304
N
0.940
PNPT1
Taeniopygia guttata
ENSTGUG00000006908
N
0.836
PNPT1
Tetraodon nigroviridis
ENSTNIG00000007460
N
0.813
PNPT1
Takifugu rubripes
ENSTRUG00000005495
N
0.761
PNPT1
Tursiops truncatus
ENSTTRG00000000029
N
0.963
PNPT1
Vicugna pacos
ENSVPAG00000007097
N
0.963
pnpt1
Xenopus tropicalis
ENSXETG00000006075
N
0.881
XP_001192933.1
Strongylocentrotus purpuratus
XP_001192933.1
N
0.709
XP_788673.2
Strongylocentrotus purpuratus
XP_788673.2
N
0.709