CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PNPT1
(
Ochotona princeps
)
KH,S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
PF00575 (S1)
IPR018111
IPR003029
ENSOPRG00000010232
T22374_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOPRP00000009372
KH
607
664
XXTVQVPLSKRAKFVGPGGYHLKKLQAETGVTISQVDEETFSIFAPTPSAMHEARDFI
ENSOPRP00000009372
S1
675
750
QLEFGAVYTATITEIRDSGVMVKLYPNMTAVLLHNSQLDHRKIKHPSALGLEVGQEIQVKYFGRDPADGRMRLSRK
Links
Other
KH,S1
family RBPs
Other
Ochotona princeps
RBPs
37 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PNPT1
Bos taurus
ENSBTAG00000008909
N
0.963
PNPT1
Felis catus
ENSFCAG00000013236
N
0.955
PNPT1
Vicugna pacos
ENSVPAG00000007097
N
0.948
Pnpt1
Mus musculus
ENSMUSG00000020464
N
0.948
PNPT1
Choloepus hoffmanni
ENSCHOG00000007360
N
0.948
PNPT1
Sus scrofa
ENSSSCG00000008399
N
0.948
PNPT1
Tursiops truncatus
ENSTTRG00000000029
N
0.948
LOC100052355
Equus caballus
ENSECAG00000020058
N
0.940
PNPT1
Homo sapiens
ENSG00000138035
N
0.940
PNPT1
Myotis lucifugus
ENSMLUG00000003886
N
0.940
PNPT1
Canis familiaris
ENSCAFG00000002891
N
0.940
Pnpt1
Rattus norvegicus
ENSRNOG00000003600
N
0.940
PNPT1
Pan troglodytes
ENSPTRG00000011934
N
0.940
PNPT1
Oryctolagus cuniculus
ENSOCUG00000006889
N
0.940
PNPT1
Callithrix jacchus
ENSCJAG00000009740
N
0.933
PNPT1
Procavia capensis
ENSPCAG00000010806
N
0.933
Ame_R001792
Ailuropoda melanoleuca
Ame_R001792
N
0.933
ENSPPYG00000012399
Pongo pygmaeus
ENSPPYG00000012399
N
0.925
PNPT1
Cavia porcellus
ENSCPOG00000011008
N
0.918
PNPT1
Spermophilus tridecemlineatus
ENSSTOG00000006304
N
0.910
PNPT1
Anolis carolinensis
ENSACAG00000003692
N
0.896
PNPT1
Monodelphis domestica
ENSMODG00000001984
N
0.888
pnpt1
Xenopus tropicalis
ENSXETG00000006075
N
0.881
PNPT1
Meleagris gallopavo
ENSMGAG00000001952
N
0.858
ENSOANG00000011178
Ornithorhynchus anatinus
ENSOANG00000011178
N
0.854
PNPT1
Gallus gallus
ENSGALG00000007935
N
0.851
PNPT1
Oryzias latipes
ENSORLG00000004335
N
0.843
PNPT1
Taeniopygia guttata
ENSTGUG00000006908
N
0.836
PNPT1
Echinops telfairi
ENSETEG00000001582
N
0.821
PNPT1
Tetraodon nigroviridis
ENSTNIG00000007460
N
0.821
PNPT1
Gorilla gorilla
ENSGGOG00000006867
N
0.815
PNPT1
Gasterosteus aculeatus
ENSGACG00000010840
N
0.806
PNPT1
Takifugu rubripes
ENSTRUG00000005495
N
0.776
gw.63.132.1
Branchiostoma floridae
gw.63.132.1
N
0.709
e_gw.10.151.1
Branchiostoma floridae
e_gw.10.151.1
N
0.709
XP_788673.2
Strongylocentrotus purpuratus
XP_788673.2
N
0.701
XP_001192933.1
Strongylocentrotus purpuratus
XP_001192933.1
N
0.701